AtomIterator

java.lang.Object
- org.jmol.api.JmolAdapterAtomIterator
- - org.jmol.adapter.smarter.AtomIterator

 class AtomIterator
extends JmolAdapterAtomIterator

Field Summary

Fields
Modifier and Type Field and Description

private Atom atom

private int atomCount

private Atom[] atoms

private BS bsAtoms

private int iatom

Fields
Modifier and Type	Field and Description
`private Atom`	`atom`
`private int`	`atomCount`
`private Atom[]`	`atoms`
`private BS`	`bsAtoms`
`private int`	`iatom`

Constructor Summary

Constructors
Constructor and Description

AtomIterator(AtomSetCollection atomSetCollection)

Constructors
Constructor and Description
`AtomIterator(AtomSetCollection atomSetCollection)`

Method Summary

Methods
Modifier and Type	Method and Description
`char`	`getAlternateLocationID()`
`java.lang.String`	`getAtomName()`
`int`	`getAtomSerial()`
`int`	`getAtomSetIndex()`
`int`	`getAtomSite()`
`BS`	`getAtomSymmetry()`
`float`	`getBfactor()`
`int`	`getChainID()`
`int`	`getElementNumber()`
`int`	`getFormalCharge()`
`java.lang.String`	`getGroup3()`
`char`	`getInsertionCode()`
`boolean`	`getIsHetero()`
`int`	`getOccupancy()`
`float`	`getPartialCharge()`
`float`	`getRadius()`
`int`	`getSequenceNumber()`
`JmolList<Tensor>`	`getTensors()`
`java.lang.Object`	`getUniqueID()`
`float`	`getVectorX()`
`float`	`getVectorY()`
`float`	`getVectorZ()`
`float`	`getX()`
`P3`	`getXYZ()`
`float`	`getY()`
`float`	`getZ()`
`boolean`	`hasNext()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - iatom
```
private int iatom
```
  - atom
```
private Atom atom
```
  - atomCount
```
private int atomCount
```
  - atoms
```
private Atom[] atoms
```
  - bsAtoms
```
private BS bsAtoms
```
- Constructor Detail
  - AtomIterator
```
AtomIterator(AtomSetCollection atomSetCollection)
```
- Method Detail
  - hasNext
```
public boolean hasNext()
```
    Specified by:
    
    hasNext in class JmolAdapterAtomIterator
  - getAtomSetIndex
```
public int getAtomSetIndex()
```
    Overrides:
    
    getAtomSetIndex in class JmolAdapterAtomIterator
  - getAtomSymmetry
```
public BS getAtomSymmetry()
```
    Overrides:
    
    getAtomSymmetry in class JmolAdapterAtomIterator
  - getAtomSite
```
public int getAtomSite()
```
    Overrides:
    
    getAtomSite in class JmolAdapterAtomIterator
  - getUniqueID
```
public java.lang.Object getUniqueID()
```
    Specified by:
    
    getUniqueID in class JmolAdapterAtomIterator
  - getElementNumber
```
public int getElementNumber()
```
    Overrides:
    
    getElementNumber in class JmolAdapterAtomIterator
  - getAtomName
```
public java.lang.String getAtomName()
```
    Overrides:
    
    getAtomName in class JmolAdapterAtomIterator
  - getFormalCharge
```
public int getFormalCharge()
```
    Overrides:
    
    getFormalCharge in class JmolAdapterAtomIterator
  - getPartialCharge
```
public float getPartialCharge()
```
    Overrides:
    
    getPartialCharge in class JmolAdapterAtomIterator
  - getTensors
```
public JmolList<Tensor> getTensors()
```
    Overrides:
    
    getTensors in class JmolAdapterAtomIterator
  - getRadius
```
public float getRadius()
```
    Overrides:
    
    getRadius in class JmolAdapterAtomIterator
  - getX
```
public float getX()
```
    Specified by:
    
    getX in class JmolAdapterAtomIterator
  - getY
```
public float getY()
```
    Specified by:
    
    getY in class JmolAdapterAtomIterator
  - getZ
```
public float getZ()
```
    Specified by:
    
    getZ in class JmolAdapterAtomIterator
  - getVectorX
```
public float getVectorX()
```
    Overrides:
    
    getVectorX in class JmolAdapterAtomIterator
  - getVectorY
```
public float getVectorY()
```
    Overrides:
    
    getVectorY in class JmolAdapterAtomIterator
  - getVectorZ
```
public float getVectorZ()
```
    Overrides:
    
    getVectorZ in class JmolAdapterAtomIterator
  - getBfactor
```
public float getBfactor()
```
    Overrides:
    
    getBfactor in class JmolAdapterAtomIterator
  - getOccupancy
```
public int getOccupancy()
```
    Overrides:
    
    getOccupancy in class JmolAdapterAtomIterator
  - getIsHetero
```
public boolean getIsHetero()
```
    Overrides:
    
    getIsHetero in class JmolAdapterAtomIterator
  - getAtomSerial
```
public int getAtomSerial()
```
    Overrides:
    
    getAtomSerial in class JmolAdapterAtomIterator
  - getChainID
```
public int getChainID()
```
    Overrides:
    
    getChainID in class JmolAdapterAtomIterator
  - getAlternateLocationID
```
public char getAlternateLocationID()
```
    Overrides:
    
    getAlternateLocationID in class JmolAdapterAtomIterator
  - getGroup3
```
public java.lang.String getGroup3()
```
    Overrides:
    
    getGroup3 in class JmolAdapterAtomIterator
  - getSequenceNumber
```
public int getSequenceNumber()
```
    Overrides:
    
    getSequenceNumber in class JmolAdapterAtomIterator
  - getInsertionCode
```
public char getInsertionCode()
```
    Overrides:
    
    getInsertionCode in class JmolAdapterAtomIterator
  - getXYZ
```
public P3 getXYZ()
```
    Specified by:
    
    getXYZ in class JmolAdapterAtomIterator

Class AtomIterator

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

iatom

atom

atomCount

atoms

bsAtoms

Constructor Detail

AtomIterator

Method Detail

hasNext

getAtomSetIndex

getAtomSymmetry

getAtomSite

getUniqueID

getElementNumber

getAtomName

getFormalCharge

getPartialCharge

getTensors

getRadius

getX

getY

getZ

getVectorX

getVectorY

getVectorZ

getBfactor

getOccupancy

getIsHetero

getAtomSerial

getChainID

getAlternateLocationID

getGroup3

getSequenceNumber

getInsertionCode

getXYZ