org.jmol.export

Class _IdtfExporter

java.lang.Object

org.jmol.export.___Exporter

org.jmol.export.__CartesianExporter

org.jmol.export._IdtfExporter

public class _IdtfExporter
extends __CartesianExporter

Field Summary

Fields

Modifier and Type	Field and Description
private Matrix4f	cylinderMatrix
private boolean	haveCircle
private boolean	haveCone
private boolean	haveCylinder
private boolean	haveCylinderIn
private boolean	haveSphere
private java.util.Map<java.lang.String,java.lang.Boolean>	htDefs
private java.util.Map<java.lang.String,JmolList<java.lang.String>>	htNodes
private int	iObj
private Matrix4f	m
private SB	models
private SB	modifiers
private P3	ptMax
private P3	ptMin
private SB	resources
private SB	sbTemp
private int[][]	triangleFace

Fields inherited from class org.jmol.export.__CartesianExporter

ptScaled, sphereMatrix, viewpoint

Fields inherited from class org.jmol.export.___Exporter

aperatureAngle, backgroundColix, bw, cameraDistance, cameraPosition, center, commandLineOptions, commentChar, degreesPerRadian, depthZ, exportScale, exportType, fileName, fixedRotationCenter, g3d, isCartesian, isToFile, jmolRenderer, lightSource, lineWidthMad, nBytes, output, privateKey, referenceCenter, scalePixelsPerAngstrom, screenHeight, screenWidth, slabZ, tempP1, tempP2, tempP3, tempV1, tempV2, tempV3, viewer

Constructor Summary

Constructors

Constructor and Description
_IdtfExporter()

Method Summary

Methods

Modifier and Type	Method and Description
private void	addColix(short colix, boolean haveColors)
private void	addMeshData(java.lang.String key, int nFaces, int nCoord, int nNormals, int nColors, SB sbFaceCoordIndices, SB sbFaceNormalIndices, SB sbColorIndices, SB sbCoords, SB sbNormals, SB sbColors)
private void	addShader(java.lang.String key, short colix)
private void	checkPoint(Tuple3f pt)
(package private) java.lang.String	finalizeOutput()
private java.lang.String	getAuxiliaryFileData()
private java.lang.String	getCircleResource()
private java.lang.String	getConeResource()
private java.lang.String	getCylinderResource(boolean inSide)
private java.lang.String	getMeshData(java.lang.String type, int[][] indices, Tuple3f[] vertexes, Tuple3f[] normals)
private void	getMeshHeader(java.lang.String type, int nFaces, int vertexCount, int normalCount, int colorCount, SB sb)
private java.lang.String	getParentItem(java.lang.String name, Matrix4f m)
private java.lang.String	getSphereResource()
private java.lang.String	getTriangleResource(java.lang.String key, P3 pt1, P3 pt2, P3 pt3)
protected void	output(Tuple3f pt)
private void	output(Tuple3f pt, SB sb, boolean checkpt)
protected void	outputCircle(P3 pt1, P3 pt2, float radius, short colix, boolean doFill)
private void	outputCircle(P3 ptCenter, P3 ptPerp, short colix, float radius)
protected void	outputCone(P3 ptBase, P3 ptTip, float radius, short colix)
protected boolean	outputCylinder(P3 ptCenter, P3 pt1, P3 pt2, short colix, byte endcaps, float radius, P3 ptX, P3 ptY, boolean checkRadius)
private boolean	outputEllipse(P3 ptCenter, P3 ptZ, P3 ptX, P3 ptY, short colix)
private void	outputEllipsoid(P3 center, Matrix4f sphereMatrix, short colix)
protected void	outputEllipsoid(P3 center, P3[] points, short colix)
protected void	outputFace(int[] face, int[] map, int faceVertexMax)
protected void	outputFooter()
protected void	outputHeader()
private void	outputNodes()
protected void	outputSphere(P3 center, float radius, short colix, boolean checkRadius)
protected void	outputSurface(P3[] vertices, V3[] normals, short[] colixes, int[][] indices, short[] polygonColixes, int nVertices, int nPolygons, int nFaces, BS bsPolygons, int faceVertexMax, short colix, JmolList<java.lang.Short> colorList, java.util.Map<java.lang.Short,java.lang.Integer> htColixes, P3 offset)
protected void	outputTextPixel(P3 pt, int argb)
protected void	outputTriangle(P3 pt1, P3 pt2, P3 pt3, short colix)

Methods inherited from class org.jmol.export.__CartesianExporter

drawAtom, drawCircle, drawCylinder, drawEllipse, drawPixel, drawTextPixel, fillConeScreen, fillCylinderScreen, fillCylinderScreenMad, fillEllipsoid, fillSphere, fillTriangle, getCameraPosition, getCoordinateMap, getModelCenter, getNormalMap, outputIndices, plotImage, plotText, scale, scalePt, setSphereMatrix

Methods inherited from class org.jmol.export.___Exporter

drawFilledCircle, drawSurface, finalizeOutput2, getColorList, getConeMesh, getExportDate, getJmolPerspective, getRotationMatrix, getRotationMatrix, getTriad, initializeOutput, initOutput, opacityFractionalFromArgb, opacityFractionalFromColix, output, outputComment, outputJmolPerspective, outputVertex, outputVertices, rgbFractionalFromArgb, rgbFractionalFromColix, round, round, setRenderer, setTempVertex, translucencyFractionalFromColix

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

haveSphere

private boolean haveSphere

haveCylinder

private boolean haveCylinder

haveCylinderIn

private boolean haveCylinderIn

haveCone

private boolean haveCone

haveCircle

private boolean haveCircle

ptMin

private P3 ptMin

ptMax

private P3 ptMax

iObj

private int iObj

htDefs

private java.util.Map<java.lang.String,java.lang.Boolean> htDefs

m

private final Matrix4f m

models

private final SB models

resources

private final SB resources

modifiers

private final SB modifiers

htNodes

private java.util.Map<java.lang.String,JmolList<java.lang.String>> htNodes

cylinderMatrix

private Matrix4f cylinderMatrix

sbTemp

private SB sbTemp

triangleFace

private int[][] triangleFace

Constructor Detail

_IdtfExporter

public _IdtfExporter()

Method Detail

output

protected void output(Tuple3f pt)

Specified by:

output in class ___Exporter

output

private void output(Tuple3f pt,
          SB sb,
          boolean checkpt)

checkPoint

private void checkPoint(Tuple3f pt)

outputHeader

protected void outputHeader()

Specified by:

outputHeader in class ___Exporter

finalizeOutput

java.lang.String finalizeOutput()

Overrides:

finalizeOutput in class ___Exporter

getAuxiliaryFileData

private java.lang.String getAuxiliaryFileData()

getParentItem

private java.lang.String getParentItem(java.lang.String name,
                             Matrix4f m)

addColix

private void addColix(short colix,
            boolean haveColors)

addShader

private void addShader(java.lang.String key,
             short colix)

outputFooter

protected void outputFooter()

Overrides:

outputFooter in class ___Exporter

outputNodes

private void outputNodes()

outputEllipsoid

protected void outputEllipsoid(P3 center,
                   P3[] points,
                   short colix)

Specified by:

outputEllipsoid in class __CartesianExporter

outputEllipsoid

private void outputEllipsoid(P3 center,
                   Matrix4f sphereMatrix,
                   short colix)

getSphereResource

private java.lang.String getSphereResource()

getMeshData

private java.lang.String getMeshData(java.lang.String type,
                           int[][] indices,
                           Tuple3f[] vertexes,
                           Tuple3f[] normals)

getMeshHeader

private void getMeshHeader(java.lang.String type,
                 int nFaces,
                 int vertexCount,
                 int normalCount,
                 int colorCount,
                 SB sb)

outputCylinder

protected boolean outputCylinder(P3 ptCenter,
                     P3 pt1,
                     P3 pt2,
                     short colix,
                     byte endcaps,
                     float radius,
                     P3 ptX,
                     P3 ptY,
                     boolean checkRadius)

Specified by:

outputCylinder in class __CartesianExporter

outputCircle

protected void outputCircle(P3 pt1,
                P3 pt2,
                float radius,
                short colix,
                boolean doFill)

Specified by:

outputCircle in class __CartesianExporter

outputEllipse

private boolean outputEllipse(P3 ptCenter,
                    P3 ptZ,
                    P3 ptX,
                    P3 ptY,
                    short colix)

outputCircle

private void outputCircle(P3 ptCenter,
                P3 ptPerp,
                short colix,
                float radius)

getCylinderResource

private java.lang.String getCylinderResource(boolean inSide)

outputFace

protected void outputFace(int[] face,
              int[] map,
              int faceVertexMax)

Specified by:

outputFace in class __CartesianExporter

outputSurface

protected void outputSurface(P3[] vertices,
                 V3[] normals,
                 short[] colixes,
                 int[][] indices,
                 short[] polygonColixes,
                 int nVertices,
                 int nPolygons,
                 int nFaces,
                 BS bsPolygons,
                 int faceVertexMax,
                 short colix,
                 JmolList<java.lang.Short> colorList,
                 java.util.Map<java.lang.Short,java.lang.Integer> htColixes,
                 P3 offset)

Overrides:

outputSurface in class ___Exporter

Parameters:

vertices - generally unique vertices [0:nVertices)

normals - one per vertex

colixes - one per vertex, or null

indices - one per triangular or quad polygon; may have additional elements beyond vertex indices if faceVertexMax = 3 triangular if faceVertexMax == 3; 3 or 4 if face VertexMax = 4

polygonColixes - face-based colixes

nVertices - vertices[nVertices-1] is last vertex

nPolygons - indices[nPolygons - 1] is last polygon

nFaces - number of triangular faces required

bsPolygons - number of polygons (triangles or quads)

faceVertexMax - (3) triangles only, indices[][i] may have more elements (4) triangles and quads; indices[][i].length determines

colix - overall (solid) color index

colorList - list of unique color IDs

htColixes - map of color IDs to colorList

addMeshData

private void addMeshData(java.lang.String key,
               int nFaces,
               int nCoord,
               int nNormals,
               int nColors,
               SB sbFaceCoordIndices,
               SB sbFaceNormalIndices,
               SB sbColorIndices,
               SB sbCoords,
               SB sbNormals,
               SB sbColors)

outputCone

protected void outputCone(P3 ptBase,
              P3 ptTip,
              float radius,
              short colix)

Specified by:

outputCone in class __CartesianExporter

getConeResource

private java.lang.String getConeResource()

getCircleResource

private java.lang.String getCircleResource()

outputSphere

protected void outputSphere(P3 center,
                float radius,
                short colix,
                boolean checkRadius)

Specified by:

outputSphere in class __CartesianExporter

outputTextPixel

protected void outputTextPixel(P3 pt,
                   int argb)

Specified by:

outputTextPixel in class __CartesianExporter

outputTriangle

protected void outputTriangle(P3 pt1,
                  P3 pt2,
                  P3 pt3,
                  short colix)

Specified by:

outputTriangle in class __CartesianExporter

getTriangleResource

private java.lang.String getTriangleResource(java.lang.String key,
                                   P3 pt1,
                                   P3 pt2,
                                   P3 pt3)