org.jmol.thread

Class SpinThread

java.lang.Object

java.lang.Thread

org.jmol.thread.JmolThread

org.jmol.thread.SpinThread

All Implemented Interfaces:

java.lang.Runnable

public class SpinThread
extends JmolThread

Nested Class Summary

Nested classes/interfaces inherited from class java.lang.Thread

java.lang.Thread.State, java.lang.Thread.UncaughtExceptionHandler

Field Summary

Fields

Modifier and Type	Field and Description
private float	angle
private BS	bsAtoms
private BS[]	bsBranches
private float[]	dihedralList
private float	endDegrees
private JmolList<P3>	endPositions
private boolean	haveNotified
private int	index
(package private) boolean	isDone
private boolean	isGesture
private boolean	isNav
private float	myFps
private float	nDegrees
private TransformManager	transformManager

Fields inherited from class org.jmol.thread.JmolThread

CHECK1, CHECK2, CHECK3, currentTime, eval, FINISH, hoverEnabled, INIT, isJS, isReset, junk, lastRepaintTime, MAIN, name, sc, sleepTime, startTime, stopped, targetTime, viewer

Fields inherited from class java.lang.Thread

MAX_PRIORITY, MIN_PRIORITY, NORM_PRIORITY

Constructor Summary

Constructors

Constructor and Description
SpinThread(TransformManager transformManager, Viewer viewer, float endDegrees, JmolList<P3> endPositions, float[] dihedralList, BS bsAtoms, boolean isNav, boolean isGesture)

Method Summary

Methods

Modifier and Type	Method and Description
private void	doTransform()
boolean	isGesture()
protected void	run1(int mode) Java: run1(INIT) while(!interrupted()) { run1(MAIN) } run1(FINISH) JavaScript: run1(INIT) run1(MAIN) --> setTimeout to run1(CHECK) or run1(FINISH) and return run1(CHECK) --> setTimeout to run1(CHECK) or run1(MAIN) or run1(FINISH) and return

Methods inherited from class org.jmol.thread.JmolThread

checkInterrupted, interrupt, oops, reset, resumeEval, run, runSleep, setEval, setViewer, start

Methods inherited from class java.lang.Thread

activeCount, checkAccess, clone, countStackFrames, currentThread, destroy, dumpStack, enumerate, getAllStackTraces, getContextClassLoader, getDefaultUncaughtExceptionHandler, getId, getName, getPriority, getStackTrace, getState, getThreadGroup, getUncaughtExceptionHandler, holdsLock, interrupted, isAlive, isDaemon, isInterrupted, join, join, join, resume, setContextClassLoader, setDaemon, setDefaultUncaughtExceptionHandler, setName, setPriority, setUncaughtExceptionHandler, sleep, sleep, stop, stop, suspend, toString, yield

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

transformManager

private final TransformManager transformManager

endDegrees

private float endDegrees

endPositions

private JmolList<P3> endPositions

dihedralList

private float[] dihedralList

nDegrees

private float nDegrees

bsAtoms

private BS bsAtoms

isNav

private boolean isNav

isGesture

private boolean isGesture

myFps

private float myFps

angle

private float angle

haveNotified

private boolean haveNotified

index

private int index

bsBranches

private BS[] bsBranches

isDone

boolean isDone

Constructor Detail

SpinThread

public SpinThread(TransformManager transformManager,
          Viewer viewer,
          float endDegrees,
          JmolList<P3> endPositions,
          float[] dihedralList,
          BS bsAtoms,
          boolean isNav,
          boolean isGesture)

Method Detail

isGesture

public boolean isGesture()

run1

protected void run1(int mode)
             throws java.lang.InterruptedException

Java: run1(INIT) while(!interrupted()) { run1(MAIN) } run1(FINISH) JavaScript: run1(INIT) run1(MAIN) --> setTimeout to run1(CHECK) or run1(FINISH) and return run1(CHECK) --> setTimeout to run1(CHECK) or run1(MAIN) or run1(FINISH) and return

Specified by:

run1 in class JmolThread

Throws:

java.lang.InterruptedException

doTransform

private void doTransform()