org.openscience.jvxl.simplewriter

Class SimpleMarchingCubes

java.lang.Object

org.jmol.util.TriangleData

org.jmol.jvxl.calc.MarchingCubes

org.openscience.jvxl.simplewriter.SimpleMarchingCubes

public class SimpleMarchingCubes
extends MarchingCubes

Field Summary

Fields

Modifier and Type	Field and Description
private float	calculatedArea
private float	calculatedVolume
private boolean	doCalcArea
private boolean	doSaveSurfacePoints
private JmolList<P3>	surfacePoints
private V3	vAB
private V3	vAC
private VoxelDataCreator	vdc
private V3	vTemp

Fields inherited from class org.jmol.jvxl.calc.MarchingCubes

bsExcludedPlanes, bsExcludedTriangles, bsExcludedVertices, bsValues, bsVoxels, colorDensity, contourType, cubeCountX, cubeCountY, cubeCountZ, cubeVertexVectors, cutoff, edgeCount, edgeData, edgePointIndexes, edgeTypeTable, edgeVectors, edgeVertexPlanes, edgeVertexPlanesHighToLow, edgeVertexPlanesLowToHigh, edgeVertexPointers, edgeVertexPointersHighToLow, edgeVertexPointersLowToHigh, fReturn, insideMaskTable, integrateSquared, isContoured, isCutoffAbsolute, isoPointIndexPlanes, isSquared, isXLowToHigh, linearOffsets, mode, MODE_CUBE, MODE_JVXL, MODE_PLANES, nTriangles, nY, nZ, pointA, pt0, surfaceReader, vertexValues, volumeData, voxelVertexVectors, yzCount, yzPlanePts, yzPlanes

Fields inherited from class org.jmol.util.TriangleData

cubeVertexOffsets, edgeVertexes, Pwr2, triangleTable2

Constructor Summary

Constructors

Constructor and Description
SimpleMarchingCubes(VoxelDataCreator vdc, VolumeData volumeData, Parameters params, JvxlData jvxlData, JmolList<P3> surfacePointsReturn, float[] areaVolumeReturn)

Method Summary

Methods

Modifier and Type	Method and Description
protected void	addTriangle(int ia, int ib, int ic, int edgeType)
protected float	getValue(int i, int x, int y, int z, int pt, float[] tempValues)
protected int	newVertex(P3 pointA, V3 edgeVector, float f)
protected void	processTriangles(int insideMask)

Methods inherited from class org.jmol.jvxl.calc.MarchingCubes

addEdgeData, addVertex, calcVertexPoint, calcVoxelVertexVectors, getBsVoxels, getEdgeData, getLinearOffset, getValueArray, isInside, processOneCubical, resetIndexPlane, setLinearOffsets, setParameters

Methods inherited from class org.jmol.util.TriangleData

intersectPlane

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

doCalcArea

private boolean doCalcArea

doSaveSurfacePoints

private boolean doSaveSurfacePoints

calculatedArea

private float calculatedArea

calculatedVolume

private float calculatedVolume

surfacePoints

private JmolList<P3> surfacePoints

vdc

private VoxelDataCreator vdc

vTemp

private V3 vTemp

vAC

private V3 vAC

vAB

private V3 vAB

Constructor Detail

SimpleMarchingCubes

public SimpleMarchingCubes(VoxelDataCreator vdc,
                   VolumeData volumeData,
                   Parameters params,
                   JvxlData jvxlData,
                   JmolList<P3> surfacePointsReturn,
                   float[] areaVolumeReturn)

Method Detail

getValue

protected float getValue(int i,
             int x,
             int y,
             int z,
             int pt,
             float[] tempValues)

newVertex

protected int newVertex(P3 pointA,
            V3 edgeVector,
            float f)

processTriangles

protected void processTriangles(int insideMask)

Overrides:

processTriangles in class MarchingCubes

addTriangle

protected void addTriangle(int ia,
               int ib,
               int ic,
               int edgeType)

Overrides:

addTriangle in class MarchingCubes