# filelist

dirname: /usr/src/debug/ugene-1.11.5/src/ugeneui/src/main_window
filetypes: ffffffffffffffffff
filenames:
  ToolBarManager.h/ToolBarManager.cpp/TmpDirChangeDialogController.h/TmpDirChangeDialogController.cpp/ShutdownTask.h/ShutdownTask.cpp/MenuManager.h/MenuManager.cpp/MainWindowImpl.h/MainWindowImpl.cpp/MDIManagerImpl.h/MDIManagerImpl.cpp/DockManagerImpl.h/DockManagerImpl.cpp/CheckUpdatesTask.h/CheckUpdatesTask.cpp/AboutDialogController.h/AboutDialogController.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/ugeneui/_tmp/moc/release
filetypes: ffffffffffffffffffffffffffffff
filenames:
  moc_UserApplicationsSettingsGUIController.cpp/moc_TmpDirChangeDialogController.cpp/moc_TaskViewController.cpp/moc_TaskStatusBar.cpp/moc_ShutdownTask.cpp/moc_Shtirlitz.cpp/moc_ResourceSettingsGUIController.cpp/moc_ProjectViewImpl.cpp/moc_ProjectTasksGui.cpp/moc_ProjectServiceImpl.cpp/moc_ProjectLoaderImpl.cpp/moc_ProjectImpl.cpp/moc_PluginViewerImpl.cpp/moc_PluginViewerController.cpp/moc_NetworkSettingsGUIController.cpp/moc_MultipleDocumentsReadingModeSelectorController.cpp/moc_MenuManager.cpp/moc_MainWindowImpl.cpp/moc_MDIManagerImpl.cpp/moc_LogSettingsGUIController.cpp/moc_FormatSettingsGUIController.cpp/moc_ExportProjectDialogController.cpp/moc_DocumentReadingModeSelectorController.cpp/moc_DocumentFormatSelectorController.cpp/moc_DockManagerImpl.cpp/moc_CheckUpdatesTask.cpp/moc_AppSettingsGUIImpl.cpp/moc_AppSettingsDialogTree.cpp/moc_AppSettingsDialogController.cpp/moc_AboutDialogController.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/libs_3rdparty/samtools/src/samtools
filetypes: dfffffffffffffffffffffffffffff
filenames:
  bcftools/sam_header.c/sam.h/sam.c/razf.h/razf.c/kstring.h/kstring.c/ksort.h/kprobaln.h/kprobaln.c/knetfile.h/knetfile.c/khash.h/faidx.h/faidx.c/errmod.h/errmod.c/bgzf.h/bgzf.c/bam_pileup.c/bam_md.c/bam_lpileup.c/bam_import.c/bam_endian.h/bam_aux.c/bam2bcf.h/bam2bcf.c/bam.h/bam.c


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2Core/src/gobjects
filetypes: ffffffffffffffffffffffff
filenames:
  UnloadedObject.h/UnloadedObject.cpp/TextObject.h/TextObject.cpp/PhyTreeObject.h/PhyTreeObject.cpp/MAlignmentObject.h/MAlignmentObject.cpp/GObjectUtils.h/GObjectUtils.cpp/GObjectTypes.h/GObjectTypes.cpp/GObjectRelationRoles.h/GObjectRelationRoles.cpp/DNASequenceObject.h/DNASequenceObject.cpp/DNAChromatogramObject.h/DNAChromatogramObject.cpp/BioStruct3DObject.h/BioStruct3DObject.cpp/AssemblyObject.h/AssemblyObject.cpp/AnnotationTableObject.h/AnnotationTableObject.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/plugins/enzymes/src
filetypes: fffffffffffffffffffffffff
filenames:
  FindEnzymesTask.h/FindEnzymesTask.cpp/FindEnzymesDialog.h/FindEnzymesDialog.cpp/FindEnzymesAlgorithm.h/EnzymesTests.h/EnzymesTests.cpp/EnzymesQuery.h/EnzymesQuery.cpp/EnzymesPlugin.h/EnzymesPlugin.cpp/EnzymesIO.h/EnzymesIO.cpp/EditFragmentDialog.h/EditFragmentDialog.cpp/DigestSequenceDialog.h/DigestSequenceDialog.cpp/DNAFragment.h/DNAFragment.cpp/CreateFragmentDialog.h/CreateFragmentDialog.cpp/ConstructMoleculeDialog.h/ConstructMoleculeDialog.cpp/CloningUtilTasks.h/CloningUtilTasks.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/plugins_3rdparty/kalign/src
filetypes: ddffffffffffffffff
filenames:
  kalign_tests/kalign2/TaskLocalStorage.h/TaskLocalStorage.cpp/KalignWorker.h/KalignWorker.cpp/KalignUtils.h/KalignUtils.cpp/KalignTask.h/KalignTask.cpp/KalignPlugin.h/KalignPlugin.cpp/KalignException.h/KalignException.cpp/KalignDialogController.h/KalignDialogController.cpp/KalignAdapter.h/KalignAdapter.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2Core/_tmp/moc/release
filetypes: ffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  moc_ZlibAdapter.cpp/moc_VFSAdapter.cpp/moc_UserApplicationsSettings.cpp/moc_UnloadedObject.cpp/moc_U2SqlHelpers.cpp/moc_U2SequenceUtils.cpp/moc_U2DbiUtils.cpp/moc_U2DbiRegistry.cpp/moc_U2Bits.cpp/moc_U2AttributeUtils.cpp/moc_U2AssemblyUtils.cpp/moc_U2AnnotationUtils.cpp/moc_U1AnnotationUtils.cpp/moc_TmpDirChecker.cpp/moc_Timer.cpp/moc_TextObject.cpp/moc_TaskStarter.cpp/moc_TaskSignalMapper.cpp/moc_Task.cpp/moc_TLSTask.cpp/moc_StringAdapter.cpp/moc_StateLockableDataModel.cpp/moc_Settings.cpp/moc_ServiceModel.cpp/moc_SequenceWalkerTask.cpp/moc_SequenceUtils.cpp/moc_SelectionModel.cpp/moc_ScriptTask.cpp/moc_SaveDocumentTask.cpp/moc_SaveDocumentStreamingTask.cpp/moc_ReverseSequenceTask.cpp/moc_ResourceTracker.cpp/moc_RemoveDocumentTask.cpp/moc_RemoveAnnotationsTask.cpp/moc_ProjectModel.cpp/moc_PluginModel.cpp/moc_PhyTreeObject.cpp/moc_MultiTask.cpp/moc_ModifySequenceObjectTask.cpp/moc_MSAUtils.cpp/moc_MAlignmentObject.cpp/moc_LogCache.cpp/moc_Log.cpp/moc_LocalFileAdapter.cpp/moc_LoadRemoteDocumentTask.cpp/moc_LoadDocumentTask.cpp/moc_LRegionsSelection.cpp/moc_L10n.cpp/moc_IOAdapter.cpp/moc_HttpFileAdapter.cpp/moc_GUrlUtils.cpp/moc_GObjectSelection.cpp/moc_GObject.cpp/moc_FormatSettings.cpp/moc_FailTask.cpp/moc_ExtractAnnotatedRegionTask.cpp/moc_ExternalToolRegistry.cpp/moc_DocumentSelection.cpp/moc_DocumentProviderTask.cpp/moc_DocumentModel.cpp/moc_DocumentImport.cpp/moc_DocumentFormatConfigurators.cpp/moc_DbiDocumentFormat.cpp/moc_DataBaseRegistry.cpp/moc_DNASequenceSelection.cpp/moc_DNASequenceObject.cpp/moc_DNAChromatogramObject.cpp/moc_DNAAlphabetRegistryImpl.cpp/moc_DIProperties.cpp/moc_DBXRefRegistry.cpp/moc_CreateAnnotationTask.cpp/moc_Counter.cpp/moc_CopyDocumentTask.cpp/moc_CopyDataTask.cpp/moc_CMDLineRegistry.cpp/moc_CMDLineCoreOptions.cpp/moc_BioStruct3DObject.cpp/moc_BackgroundTaskRunner.cpp/moc_AutoAnnotationsSupport.cpp/moc_AssemblyObject.cpp/moc_AppResources.cpp/moc_AppGlobalObject.cpp/moc_AppContext.cpp/moc_AnnotationTableObject.cpp/moc_AnnotationSettings.cpp/moc_AnnotationSelection.cpp/moc_AddSequencesToAlignmentTask.cpp/moc_AddDocumentTask.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/plugins/remote_service/_tmp/moc/release
filetypes: ffffff
filenames:
  moc_RemoteTasksDialog.cpp/moc_RemoteServiceUtilTasks.cpp/moc_RemoteServiceSettingsUI.cpp/moc_RemoteServicePlugin.cpp/moc_RemoteServicePingTask.cpp/moc_RemoteServiceMachine.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/plugins_3rdparty/ball/src/include/BALL/MATHS
filetypes: fffffffffffff
filenames:
  vector4.h/vector3.h/surface.h/sphere3.h/simpleBox3.h/quaternion.h/plane3.h/matrix44.h/line3.h/common.h/circle3.h/angle.h/analyticalGeometry.h


dirname: /usr/src/debug/ugene-1.11.5/src/plugins/external_tool_support/src/bowtie
filetypes: dffffff
filenames:
  bowtie_tests/BowtieTask.h/BowtieTask.cpp/BowtieSupport.h/BowtieSupport.cpp/BowtieSettingsWidget.h/BowtieSettingsWidget.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2Algorithm/src/misc
filetypes: ffffffffffffffffff
filenames:
  RollingMatrix.h/RollingArray.h/RepeatFinderTaskFactory.h/RepeatFinderSettings.h/FindAlgorithmTask.h/FindAlgorithmTask.cpp/FindAlgorithm.h/FindAlgorithm.cpp/EnzymeModel.h/EnzymeModel.cpp/DynTable.h/DnaAssemblyMultiTask.h/DnaAssemblyMultiTask.cpp/CDSearchTaskFactory.h/BitsTable.h/BitsTable.cpp/BinaryFindOpenCL.h/BinaryFindOpenCL.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/plugins/dotplot/_tmp/moc/release
filetypes: ffffffff
filenames:
  moc_DotPlotWidget.cpp/moc_DotPlotTasks.cpp/moc_DotPlotSplitter.cpp/moc_DotPlotPlugin.cpp/moc_DotPlotFilterDialog.cpp/moc_DotPlotFilesDialog.cpp/moc_DotPlotDialog.cpp/moc_DotPlotClasses.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/libs_3rdparty/gtest/src/gtest
filetypes: dfffffff
filenames:
  internal/gtest_pred_impl.h/gtest.h/gtest-test-part.h/gtest-spi.h/gtest-printers.h/gtest-message.h/gtest-death-test.h


dirname: /usr/src/debug/ugene-1.11.5/src/plugins/external_tool_support/src/mafft
filetypes: ffffffff
filenames:
  MAFFTWorker.h/MAFFTWorker.cpp/MAFFTSupportTask.h/MAFFTSupportTask.cpp/MAFFTSupportRunDialog.h/MAFFTSupportRunDialog.cpp/MAFFTSupport.h/MAFFTSupport.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2Core/src/selection
filetypes: ffffffffffffffff
filenames:
  TextSelection.h/SelectionUtils.h/SelectionUtils.cpp/SelectionTypes.h/SelectionTypes.cpp/SelectionModel.h/SelectionModel.cpp/LRegionsSelection.h/LRegionsSelection.cpp/GObjectSelection.h/GObjectSelection.cpp/DocumentSelection.h/DocumentSelection.cpp/DNASequenceSelection.h/AnnotationSelection.h/AnnotationSelection.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2Algorithm/src/phyltree
filetypes: fffffff
filenames:
  PhyTreeGeneratorTask.h/PhyTreeGeneratorTask.cpp/PhyTreeGeneratorRegistry.h/PhyTreeGeneratorRegistry.cpp/PhyTreeGenerator.h/CreatePhyTreeSettings.h/CreatePhyTreeSettings.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/plugins_3rdparty/ball/src/source/STRUCTURE
filetypes: ffffffffffffffffff
filenames:
  triangulatedSurface.cpp/triangulatedSES.cpp/triangulatedSAS.cpp/trianglePoint.cpp/triangleEdge.cpp/triangle.cpp/solventExcludedSurface.cpp/solventAccessibleSurface.cpp/reducedSurface.cpp/SESVertex.cpp/SESFace.cpp/SESEdge.cpp/SASVertex.cpp/SASFace.cpp/SASEdge.cpp/RSVertex.cpp/RSFace.cpp/RSEdge.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/plugins_3rdparty/hmm2/src/hmmer2
filetypes: fffffffffffffffffffffff
filenames:
  weight.cpp/vectorops.cpp/trace.cpp/tophits.cpp/structs.h/sre_string.cpp/sre_random.cpp/sre_math.cpp/sqerror.cpp/prior.cpp/plan7.cpp/msa.cpp/modelmakers.cpp/mathsupport.cpp/masks.cpp/iupac.cpp/histogram.cpp/fast_algorithms.cpp/core_algorithms.cpp/cluster.cpp/checksum.cpp/alphabet.cpp/aligneval.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2Test/_tmp/moc/release
filetypes: ffffffff
filenames:
  moc_XMLTestUtils.cpp/moc_XMLTestFormat.cpp/moc_TestRunnerTask.cpp/moc_GUITestService.cpp/moc_GUITestLauncher.cpp/moc_GUITest.cpp/moc_GTestFrameworkComponents.cpp/moc_GTest.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/plugins/workflow_designer/_tmp/ui
filetypes: fffffffffff
filenames:
  ui_WorkflowSettingsWidget.h/ui_WorkflowMetaDialog.h/ui_WorkflowEditorWidget.h/ui_SchemaConfigurationDialog.h/ui_SchemaAliasesConfigurationDialog.h/ui_PortAliasesConfigurationDialog.h/ui_PaletteWidget.h/ui_ImportSchemaDialog.h/ui_ExternalProcessWorkerDialog.h/ui_CreateScriptBlockDialog.h/ui_ChooseItemDialog.h


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2View/_tmp/moc/release
filenames:
  moc_ZoomableAssemblyOverview.cpp/moc_WindowStepSelectorWidget.cpp/moc_WebWindow.cpp/moc_TreeViewerTasks.cpp/moc_TreeViewerFactory.cpp/moc_TreeViewer.cpp/moc_TreeSettingsDialog.cpp/moc_TextSettingsDialog.cpp/moc_SubstMatrixDialog.cpp/moc_SmithWatermanDialogImpl.cpp/moc_SimpleTextObjectViewTasks.cpp/moc_SimpleTextObjectView.cpp/moc_SequenceInfoFactory.cpp/moc_SequenceInfo.cpp/moc_SecStructPredictUtils.cpp/moc_SecStructDialog.cpp/moc_SearchQualifierDialog.cpp/moc_SaveSelectedSequenceFromMSADialogController.cpp/moc_SaveGraphCutoffsTask.cpp/moc_SaveGraphCutoffsDialogController.cpp/moc_PanView.cpp/moc_Overview.cpp/moc_MSAEditorUndoFramework.cpp/moc_MSAEditorTasks.cpp/moc_MSAEditorStatusBar.cpp/moc_MSAEditorSequenceArea.cpp/moc_MSAEditorOffsetsView.cpp/moc_MSAEditorNameList.cpp/moc_MSAEditorFactory.cpp/moc_MSAEditorConsensusCache.cpp/moc_MSAEditorConsensusArea.cpp/moc_MSAEditorBaseOffsetsCache.cpp/moc_MSAEditor.cpp/moc_MSAColorScheme.cpp/moc_MSACollapsibleModel.cpp/moc_MSAAlignDialog.cpp/moc_LicenseDialog.cpp/moc_GraphSettingsDialog.cpp/moc_GraphMenu.cpp/moc_GSequenceLineViewAnnotated.cpp/moc_GSequenceLineView.cpp/moc_GSequenceGraphView.cpp/moc_FindPatternWidgetFactory.cpp/moc_FindPatternWidget.cpp/moc_FindPatternTask.cpp/moc_ExportReadsDialog.cpp/moc_ExportConsensusDialog.cpp/moc_EditAnnotationDialogController.cpp/moc_DnaAssemblyUtils.cpp/moc_DnaAssemblyDialog.cpp/moc_DetView.cpp/moc_DeleteGapsDialog.cpp/moc_CreateUnrootedBranchesTask.cpp/moc_CreateSubalignimentDialogController.cpp/moc_CreateRulerDialogController.cpp/moc_CreateRectangularBranchesTask.cpp/moc_CreatePhyTreeDialogController.cpp/moc_CreateCircularBranchesTask.cpp/moc_CreateBranchesTask.cpp/moc_ConvertAssemblyToSamDialog.cpp/moc_ConsensusSelectorDialogController.cpp/moc_ColorSchemaSettingsController.cpp/moc_ColorSchemaDialogController.cpp/moc_ButtonSettingsDialog.cpp/moc_BuildIndexDialog.cpp/moc_BranchSettingsDialog.cpp/moc_AutoAnnotationUtils.cpp/moc_AssemblySettingsWidget.cpp/moc_AssemblyRuler.cpp/moc_AssemblyReferenceArea.cpp/moc_AssemblyReadsAreaHint.cpp/moc_AssemblyReadsArea.cpp/moc_AssemblyNavigationWidget.cpp/moc_AssemblyModel.cpp/moc_AssemblyInfoWidget.cpp/moc_AssemblyCoverageGraph.cpp/moc_AssemblyConsensusTask.cpp/moc_AssemblyConsensusArea.cpp/moc_AssemblyCellRenderer.cpp/moc_AssemblyBrowserTasks.cpp/moc_AssemblyBrowserFactory.cpp/moc_AssemblyBrowser.cpp/moc_AnnotationsTreeViewL.cpp/moc_AnnotationsTreeView.cpp/moc_AnnotatedDNAViewTasks.cpp/moc_AnnotatedDNAViewFactory.cpp/moc_AnnotatedDNAView.cpp/moc_AnnotHighlightWidgetFactory.cpp/moc_AnnotHighlightWidget.cpp/moc_AnnotHighlightTree.cpp/moc_AnnotHighlightSettings.cpp/moc_ADVUtils.cpp/moc_ADVSyncViewManager.cpp/moc_ADVSplitWidget.cpp/moc_ADVSingleSequenceWidget.cpp/moc_ADVSequenceWidget.cpp/moc_ADVSequenceObjectContext.cpp/moc_ADVGraphModel.cpp/moc_ADVClipboard.cpp/moc_ADVAnnotationCreation.cpp

filetypes:
[cell repeats an earlier one in this file: 100 characters]


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2Core/src/dbi
filetypes: ffffffffffffffffffff
filenames:
  U2VariantDbi.h/U2SqlHelpers.h/U2SqlHelpers.cpp/U2SequenceDbi.h/U2ObjectDbi.h/U2MsaDbi.h/U2FormatCheckResult.h/U2FeatureDbi.h/U2DbiUtils.h/U2DbiUtils.cpp/U2DbiRegistry.h/U2DbiRegistry.cpp/U2Dbi.h/U2CrossDatabaseReferenceDbi.h/U2AttributeDbi.h/U2AssemblyDbi.h/U2AnnotationDbi.h/U2AbstractDbi.h/DbiDocumentFormat.h/DbiDocumentFormat.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/plugins/biostruct3d_view/_tmp/ui
filetypes: ffff
filenames:
  ui_StructuralAlignmentDialog.h/ui_SettingsDialog.h/ui_SelectModelsDialog.h/ui_BioStruct3DSubsetEditor.h


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2Core/src/util
filetypes: fffffffffffffffffffffffffffffffff
filenames:
  U2SequenceUtils.h/U2SequenceUtils.cpp/U2OpStatusUtils.h/U2FeatureUtils.h/U2FeatureUtils.cpp/U2Bits.h/U2Bits.cpp/U2AttributeUtils.h/U2AttributeUtils.cpp/U2AssemblyUtils.h/U2AssemblyUtils.cpp/U2AssemblyReadIterator.h/U2AssemblyReadIterator.cpp/U2AnnotationUtils.h/U2AnnotationUtils.cpp/U2AlphabetUtils.h/U2AlphabetUtils.cpp/U1AnnotationUtils.h/U1AnnotationUtils.cpp/TextUtils.h/TextUtils.cpp/SequenceUtils.h/SequenceUtils.cpp/QVariantUtils.h/MSAUtils.h/MSAUtils.cpp/IOAdapterUtils.h/IOAdapterUtils.cpp/GUrlUtils.h/GUrlUtils.cpp/GAutoDeleteList.h/FormatUtils.h/FormatUtils.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2Lang/src/support
filetypes: ffffffffffffffffffffffff
filenames:
  WorkflowUtils.h/WorkflowUtils.cpp/WorkflowSettings.h/WorkflowSettings.cpp/WorkflowRunTask.h/WorkflowRunTask.cpp/WorkflowIOTasks.h/WorkflowIOTasks.cpp/WorkflowEnvImpl.h/WorkflowEnvImpl.cpp/SimpleWorkflowTask.h/SimpleWorkflowTask.cpp/ScriptWorkerSerializer.h/ScriptWorkerSerializer.cpp/SchemaSerializer.h/SchemaSerializer.cpp/MarkerUtils.h/MarkerUtils.cpp/MapDatatypeEditor.h/MapDatatypeEditor.cpp/HRSchemaSerializer.h/HRSchemaSerializer.cpp/CoreLibConstants.h/CoreLibConstants.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2Formats/_tmp/moc/release
filetypes: fffffffffffffffffffffffffff
filenames:
  moc_SwissProtPlainTextFormat.cpp/moc_StockholmFormat.cpp/moc_SQLiteDbi.cpp/moc_SCFFormat.cpp/moc_SAMFormat.cpp/moc_RawDNASequenceFormat.cpp/moc_PlainTextFormat.cpp/moc_PDWFormat.cpp/moc_PDBFormat.cpp/moc_NewickFormat.cpp/moc_NEXUSFormat.cpp/moc_MegaFormat.cpp/moc_MSFFormat.cpp/moc_GenbankPlainTextFormat.cpp/moc_GenbankLocationParser.cpp/moc_GenbankFeatures.cpp/moc_GFFFormat.cpp/moc_FastqFormat.cpp/moc_FastaFormat.cpp/moc_EMBLPlainTextFormat.cpp/moc_EMBLGenbankAbstractDocument.cpp/moc_DocumentFormatUtils.cpp/moc_ConvertAssemblyToSamTask.cpp/moc_ClustalWAlnFormat.cpp/moc_ASNFormat.cpp/moc_ACEFormat.cpp/moc_ABIFormat.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2View/src/ov_sequence
filetypes: dddfffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffffff
filenames:
  sequence_info/find_pattern/annot_highlight/WindowStepSelectorWidget.h/WindowStepSelectorWidget.cpp/SearchQualifierDialog.h/SearchQualifierDialog.cpp/SaveGraphCutoffsTask.h/SaveGraphCutoffsTask.cpp/SaveGraphCutoffsDialogController.h/SaveGraphCutoffsDialogController.cpp/PanViewRows.h/PanViewRows.cpp/PanView.h/PanView.cpp/Overview.h/Overview.cpp/GraphSettingsDialog.h/GraphSettingsDialog.cpp/GraphMenu.h/GraphMenu.cpp/GSequenceLineViewAnnotated.h/GSequenceLineViewAnnotated.cpp/GSequenceLineView.h/GSequenceLineView.cpp/GSequenceGraphViewWithFactory.h/GSequenceGraphViewWithFactory.cpp/GSequenceGraphView.h/GSequenceGraphView.cpp/EditAnnotationDialogController.h/EditAnnotationDialogController.cpp/DetView.h/DetView.cpp/CreateRulerDialogController.h/CreateRulerDialogController.cpp/AutoAnnotationUtils.h/AutoAnnotationUtils.cpp/AnnotationsTreeViewL.h/AnnotationsTreeViewL.cpp/AnnotationsTreeView.h/AnnotationsTreeView.cpp/AnnotationsTreeModel.h/AnnotationsTreeModel.cpp/AnnotatedDNAViewTasks.h/AnnotatedDNAViewTasks.cpp/AnnotatedDNAViewState.h/AnnotatedDNAViewState.cpp/AnnotatedDNAViewFactory.h/AnnotatedDNAViewFactory.cpp/AnnotatedDNAView.h/AnnotatedDNAView.cpp/ADVUtils.h/ADVUtils.cpp/ADVSyncViewManager.h/ADVSyncViewManager.cpp/ADVSplitWidget.h/ADVSingleSequenceWidget.h/ADVSingleSequenceWidget.cpp/ADVSequenceWidget.h/ADVSequenceWidget.cpp/ADVSequenceObjectContext.h/ADVSequenceObjectContext.cpp/ADVGraphModel.h/ADVGraphModel.cpp/ADVClipboard.h/ADVClipboard.cpp/ADVAnnotationCreation.h/ADVAnnotationCreation.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/plugins/expert_discovery/src/DDisc
filetypes: fffffffffffff
filenames:
  statmath.h/definitions.h/Signal.h/Signal.cpp/Sequence.h/Sequence.cpp/MetaInfo.h/MetaInfo.cpp/Extractor.h/Extractor.cpp/Definitions.cpp/Context.h/Context.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/plugins/biostruct3d_view/_tmp/moc/release
filetypes: ffffffff
filenames:
  moc_StructuralAlignmentDialog.cpp/moc_SettingsDialog.cpp/moc_SelectModelsDialog.cpp/moc_ExportImage3DGLDialog.cpp/moc_BioStruct3DViewPlugin.cpp/moc_BioStruct3DSubsetEditor.cpp/moc_BioStruct3DSplitter.cpp/moc_BioStruct3DGLWidget.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2View/src/util_smith_waterman
filetypes: fffff
filenames:
  SubstMatrixDialog.h/SubstMatrixDialog.cpp/SmithWatermanDialogImpl.h/SmithWatermanDialog.h/SmithWatermanDialog.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/plugins/dotplot/src
filetypes: ffffffffffffffff
filenames:
  DotPlotWidget.h/DotPlotWidget.cpp/DotPlotTasks.h/DotPlotTasks.cpp/DotPlotSplitter.h/DotPlotSplitter.cpp/DotPlotPlugin.h/DotPlotPlugin.cpp/DotPlotFilterDialog.h/DotPlotFilterDialog.cpp/DotPlotFilesDialog.h/DotPlotFilesDialog.cpp/DotPlotDialog.h/DotPlotDialog.cpp/DotPlotClasses.h/DotPlotClasses.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2Algorithm/src/registry
filetypes: fffffffffffffffffffffffff
filenames:
  SubstMatrixRegistry.h/SubstMatrixRegistry.cpp/SplicedAlignmentTaskRegistry.h/SplicedAlignmentTaskRegistry.cpp/SplicedAlignmentTask.h/SplicedAlignmentTask.cpp/SecStructPredictTask.h/SecStructPredictTask.cpp/SecStructPredictAlgRegistry.h/SecStructPredictAlgRegistry.cpp/RepeatFinderTaskFactoryRegistry.h/RepeatFinderTaskFactoryRegistry.cpp/OpenCLGpuRegistry.h/OpenCLGpuRegistry.cpp/MSAAlignTask.h/MSAAlignTask.cpp/MSAAlignAlgRegistry.h/MSAAlignAlgRegistry.cpp/DnaAssemblyTask.h/DnaAssemblyTask.cpp/DnaAssemblyAlgRegistry.h/DnaAssemblyAlgRegistry.cpp/CudaGpuRegistry.h/CudaGpuRegistry.cpp/CDSearchTaskFactoryRegistry.h


dirname: /usr/src/debug/ugene-1.11.5/src/plugins/external_tool_support/src
filetypes: dddddddddddffffffffffff
filenames:
  utils/tcoffee/spidey/mrbayes/mafft/clustalw/cap3/bwa/bowtie/blast_plus/blast/TaskLocalStorage.h/TaskLocalStorage.cpp/ExternalToolSupportSettingsController.h/ExternalToolSupportSettingsController.cpp/ExternalToolSupportSettings.h/ExternalToolSupportSettings.cpp/ExternalToolSupportPlugin.h/ExternalToolSupportPlugin.cpp/ExternalToolRunTask.h/ExternalToolRunTask.cpp/ETSProjectViewItemsContoller.h/ETSProjectViewItemsContoller.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/plugins_3rdparty/hmm2/src/u_calibrate
filetypes: ffffff
filenames:
  uhmmcalibrate.h/uhmmcalibrate.cpp/HMMCalibrateTask.h/HMMCalibrateTask.cpp/HMMCalibrateDialogController.h/HMMCalibrateDialogController.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2Algorithm/src/util_assembly_consensus
filetypes: fffffffffff
filenames:
  BuiltInAssemblyConsensusAlgorithms.h/BuiltInAssemblyConsensusAlgorithms.cpp/AssemblyConsensusUtils.h/AssemblyConsensusUtils.cpp/AssemblyConsensusAlgorithmSamtools.h/AssemblyConsensusAlgorithmSamtools.cpp/AssemblyConsensusAlgorithmRegistry.h/AssemblyConsensusAlgorithmRegistry.cpp/AssemblyConsensusAlgorithmDefault.h/AssemblyConsensusAlgorithmDefault.cpp/AssemblyConsensusAlgorithm.h


dirname: /usr/src/debug/ugene-1.11.5/src/plugins/external_tool_support/src/cap3
filetypes: ffffffff
filenames:
  CAP3Worker.h/CAP3Worker.cpp/CAP3SupportTask.h/CAP3SupportTask.cpp/CAP3SupportDialog.h/CAP3SupportDialog.cpp/CAP3Support.h/CAP3Support.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2Formats/src/sqlite_dbi/assembly
filetypes: ffffffff
filenames:
  SingleTableAssemblyAdapter.h/SingleTableAssemblyAdapter.cpp/RTreeAssemblyAdapter.h/RTreeAssemblyAdapter.cpp/MultiTableAssemblyAdapter.h/MultiTableAssemblyAdapter.cpp/AssemblyPackAlgorithm.h/AssemblyPackAlgorithm.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/plugins/workflow_designer/src/util
filetypes: ffffff
filenames:
  WorkerNameValidator.h/WorkerNameValidator.cpp/SaveSchemaImageUtils.h/SaveSchemaImageUtils.cpp/GrouperActionUtils.h/GrouperActionUtils.cpp


dirname: /usr/src/debug/ugene-1.11.5/src/corelibs/U2Core/src/tasks
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dirname: /usr/src/debug/unixODBC-2.3.2/cur
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filetypes:
[cell repeats an earlier one in this file: 123 characters]


dirname: /usr/src/debug/unixODBC-2.3.2/odbcinst
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dirname: /usr/src/debug/uqm-0.7.0/src/uqm/planets
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dirname: /usr/src/debug/uqm-0.7.0/src/uqm/supermelee/netplay
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dirname: /usr/src/debug/uqm-0.7.0/src/uqm/planets/generate
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dirname: /usr/src/debug/uqm-0.7.0/src/uqm/ships
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dirname: /usr/src/debug/uqm-0.7.0/src/libs/sound
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dirname: /usr/src/debug/uqm-0.7.0/src/libs/video
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dirname: /usr/src/debug/uqm-0.7.0/src/libs/graphics
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dirname: /usr/src/debug/uqm-0.7.0/src/libs/graphics/sdl
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dirname: /usr/src/debug/uqm-0.7.0/src/uqm/supermelee
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dirname: /usr/src/debug/uqm-0.7.0/src/libs/resource
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dirname: /usr/src/debug/uqm-0.7.0/src/libs/uio
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dirname: /usr/src/debug/uqm-0.7.0/src/uqm
filenames:
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filetypes:
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dirname: /usr/src/debug/uqm-0.7.0/src/libs
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dirname: /usr/src/debug/uqm-0.7.0/src/uqm/comm
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dirname: /usr/src/debug/uqm-0.7.0/src/libs/sound/decoders
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dirname: /usr/lib/debug/usr/lib64
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dirname: /usr/src/debug/urdfdom-e0836e052aad7f58d958459cfbcbff87826f0e45/urdf_parser/src
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dirname: /usr/src/debug/urg-0.8.18/src/cpp/monitor
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dirname: /usr/src/debug/urg-0.8.18/src/cpp/connection
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dirname: /usr/src/debug/urg-0.8.18/include/cpp
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dirname: /usr/src/debug/urg-0.8.18/src/c/urg
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dirname: /usr/src/debug/urg-0.8.18/src/cpp/system
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dirname: /usr/lib/debug/usr/lib64
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filenames:
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dirname: /usr/src/debug/urg-0.8.18/src/cpp/urg
filetypes: ffffffffffffff
filenames:
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dirname: /usr/src/debug/uriparser-0.7.9/src
filetypes: ffffffffffffffff
filenames:
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dirname: /usr/src/debug/urjtag-20111215-git-e1a4227/urjtag/src/stapl
filetypes: ffffffffffffffffff
filenames:
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dirname: /usr/src/debug/urjtag-20111215-git-e1a4227/urjtag/src/tap
filetypes: dddffffffffffffff
filenames:
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dirname: /usr/src/debug/urjtag-20111215-git-e1a4227/urjtag/include/urjtag
filetypes: fffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/urjtag-20111215-git-e1a4227/urjtag/src/bsdl
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dirname: /usr/src/debug/urjtag-20111215-git-e1a4227/urjtag/src/bus
filetypes: fffffffffffffffffffffffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/urjtag-20111215-git-e1a4227/urjtag/src/cmd
filetypes: fffffffffffffffffffffffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/urjtag-20111215-git-e1a4227/urjtag/src/tap/cable
filetypes: ffffffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/usb-modeswitch-1.2.7/jim
filetypes: ffffffffffffffffff
filenames:
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dirname: /usr/lib/debug/usr/lib64
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dirname: /usr/src/debug/usbredir-0.6/usbredirparser
filetypes: ffffff
filenames:
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dirname: /usr/src/debug/usbview-2.0
filetypes: ffffffffff
filenames:
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dirname: /usr/src/debug/usermode-1.111
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dirname: /usr/lib/debug/usr/bin
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filenames:
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dirname: /usr/lib/debug/usr/lib64
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dirname: /usr/src/debug/userspace-rcu-0.7.7
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dirname: /usr/lib/debug/usr/lib64
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dirname: /usr/src/debug/ustr-1.0.4
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dirname: /usr/src/debug/vavoom-1.33/source/timidity
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dirname: /usr/src/debug/vdr-2.0.4/PLUGINS/src/dvbhddevice/libhdffcmd
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dirname: /usr/src/debug/vdr-2.0.4
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dirname: /usr/src/debug/vdr-2.0.4/PLUGINS/src/dvbhddevice
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dirname: /usr/src/debug/vdr-2.0.4/include/vdr
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dirname: /usr/lib/debug/usr/lib64/vdr
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dirname: /usr/src/debug/vdr-2.0.4/symbols
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dirname: /usr/lib/debug/usr/lib64/vdr
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dirname: /usr/src/debug/epgsearch-1.0.1.beta5
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filetypes:
[cell repeats an earlier one in this file: 114 characters]


dirname: /usr/src/debug/femon-2.0.0
filetypes: dffffffffffffffffffffffffff
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dirname: /usr/src/debug/femon-2.0.0/symbols
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dirname: /usr/src/debug/osdteletext-0.9.4
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dirname: /usr/src/debug/skinenigmang-0.1.2
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dirname: /usr/src/debug/skinenigmang-0.1.2/symbols/small
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dirname: /usr/src/debug/skinsoppalusikka-2.0.2
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dirname: /usr/src/debug/skinsoppalusikka-2.0.2/symbols
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dirname: /usr/src/debug/vdr-streamdev-10db11ac/server
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dirname: /usr/src/debug/vdr-streamdev-10db11ac/client
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dirname: /usr/src/debug/sudoku-0.3.5
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dirname: /usr/src/debug/ttxtsubs-0.3.0
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dirname: /usr/src/debug/tvonscreen-1.0.141
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dirname: /usr/src/debug/vdr-vnsiserver3
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dirname: /usr/src/debug/VDrift/src/gl3v
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dirname: /usr/src/debug/virtuoso-opensource-6.1.6/libsrc/Wi
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dirname: /usr/src/debug/volume_key-0.3.9/lib
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dirname: /usr/src/debug/vorbis-tools-1.4.0/ogg123
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dirname: /usr/src/debug/VTK6.0.0/Testing/GenericBridge
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dirname: /usr/src/debug/VTK6.0.0/Filters/Extraction
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dirname: /usr/src/debug/VTK6.0.0/Rendering/FreeType/fonts
filetypes: fffffffffffff
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dirname: /usr/src/debug/VTK6.0.0/Filters/FlowPaths
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dirname: /usr/src/debug/VTK6.0.0/Interaction/Style
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dirname: /usr/src/debug/VTK6.0.0/build/Rendering/Volume
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dirname: /usr/src/debug/VTK6.0.0/build/Imaging/Statistics
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dirname: /usr/lib/debug/.build-id/fa
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dirname: /usr/src/debug/VTK6.0.0/build/Filters/General
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