org.jmol.export

Class __CartesianExporter

java.lang.Object

org.jmol.export.___Exporter

org.jmol.export.__CartesianExporter

Direct Known Subclasses:

_IdtfExporter, _MayaExporter, _ObjExporter, _VrmlExporter

public abstract class __CartesianExporter
extends ___Exporter

Field Summary

Fields

Modifier and Type	Field and Description
protected P3	ptScaled
protected Matrix4f	sphereMatrix
protected AxisAngle4f	viewpoint

Fields inherited from class org.jmol.export.___Exporter

aperatureAngle, backgroundColix, bw, cameraDistance, cameraPosition, center, commandLineOptions, commentChar, degreesPerRadian, depthZ, exportScale, exportType, fileName, fixedRotationCenter, g3d, isCartesian, isToFile, jmolRenderer, lightSource, lineWidthMad, nBytes, output, privateKey, referenceCenter, scalePixelsPerAngstrom, screenHeight, screenWidth, slabZ, tempP1, tempP2, tempP3, tempV1, tempV2, tempV3, viewer

Constructor Summary

Constructors

Constructor and Description
__CartesianExporter()

Method Summary

Methods

Modifier and Type	Method and Description
(package private) void	drawAtom(Atom atom)
(package private) void	drawCircle(int x, int y, int z, int diameter, short colix, boolean doFill)
(package private) void	drawCylinder(P3 ptA, P3 ptB, short colix1, short colix2, byte endcaps, int mad, int bondOrder) bond order -1 -- single bond, Cartesian bond order -2 -- multiple bond, Cartesian
(package private) boolean	drawEllipse(P3 ptCenter, P3 ptX, P3 ptY, short colix, boolean doFill)
(package private) void	drawPixel(short colix, int x, int y, int z, int scale)
(package private) void	drawTextPixel(int argb, int x, int y, int z)
(package private) void	fillConeScreen(short colix, byte endcap, int screenDiameter, P3 screenBase, P3 screenTip, boolean isBarb)
(package private) void	fillCylinderScreen(short colix, byte endcaps, int screenDiameter, P3 screenA, P3 screenB)
(package private) void	fillCylinderScreenMad(short colix, byte endcaps, int mad, P3 screenA, P3 screenB)
(package private) void	fillEllipsoid(P3 center, P3[] points, short colix, int x, int y, int z, int diameter, Matrix3f toEllipsoidal, double[] coef, Matrix4f deriv, P3i[] octantPoints)
(package private) void	fillSphere(short colix, int diameter, P3 pt)
protected void	fillTriangle(short colix, P3 ptA, P3 ptB, P3 ptC, boolean twoSided)
protected P3	getCameraPosition()
protected int	getCoordinateMap(Tuple3f[] vertices, int[] coordMap, BS bsValid)
protected P3	getModelCenter()
protected int[]	getNormalMap(Tuple3f[] normals, int nNormals, BS bsValid, JmolList<java.lang.String> vNormals)
protected abstract void	outputCircle(P3 pt1, P3 pt2, float radius, short colix, boolean doFill)
protected abstract void	outputCone(P3 ptBase, P3 ptTip, float radius, short colix)
protected abstract boolean	outputCylinder(P3 ptCenter, P3 pt1, P3 pt2, short colix1, byte endcaps, float radius, P3 ptX, P3 ptY, boolean checkRadius)
protected abstract void	outputEllipsoid(P3 center, P3[] points, short colix)
protected abstract void	outputFace(int[] is, int[] coordMap, int faceVertexMax)
protected void	outputIndices(int[][] indices, int[] map, int nPolygons, BS bsPolygons, int faceVertexMax)
protected abstract void	outputSphere(P3 ptAtom2, float f, short colix, boolean checkRadius)
protected abstract void	outputTextPixel(P3 pt, int argb)
protected abstract void	outputTriangle(P3 pt1, P3 pt2, P3 pt3, short colix)
(package private) void	plotImage(int x, int y, int z, java.awt.Image image, short bgcolix, int width, int height)
(package private) void	plotText(int x, int y, int z, short colix, java.lang.String text, JmolFont font3d)
protected float	scale(float f) used only for VRML and X3D; could be expanded
protected Tuple3f	scalePt(Tuple3f pt) used only for VRML and X3D; could be expanded
protected void	setSphereMatrix(Tuple3f center, float rx, float ry, float rz, AxisAngle4f a, Matrix4f sphereMatrix)
private void	setTempPoints(P3 ptA, P3 ptB, boolean isCartesian)

Methods inherited from class org.jmol.export.___Exporter

drawFilledCircle, drawSurface, finalizeOutput, finalizeOutput2, getColorList, getConeMesh, getExportDate, getJmolPerspective, getRotationMatrix, getRotationMatrix, getTriad, initializeOutput, initOutput, opacityFractionalFromArgb, opacityFractionalFromColix, output, output, outputComment, outputFooter, outputHeader, outputJmolPerspective, outputSurface, outputVertex, outputVertices, rgbFractionalFromArgb, rgbFractionalFromColix, round, round, setRenderer, setTempVertex, translucencyFractionalFromColix

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

viewpoint

protected AxisAngle4f viewpoint

ptScaled

protected P3 ptScaled

sphereMatrix

protected Matrix4f sphereMatrix

Constructor Detail

__CartesianExporter

public __CartesianExporter()

Method Detail

getModelCenter

protected P3 getModelCenter()

getCameraPosition

protected P3 getCameraPosition()

setTempPoints

private void setTempPoints(P3 ptA,
                 P3 ptB,
                 boolean isCartesian)

scale

protected float scale(float f)

used only for VRML and X3D; could be expanded

Parameters:

f -

Returns:

f*exportScale

scalePt

protected Tuple3f scalePt(Tuple3f pt)

used only for VRML and X3D; could be expanded

Parameters:

pt -

Returns:

pt or pt scaled by exportScale

getCoordinateMap

protected int getCoordinateMap(Tuple3f[] vertices,
                   int[] coordMap,
                   BS bsValid)

getNormalMap

protected int[] getNormalMap(Tuple3f[] normals,
                 int nNormals,
                 BS bsValid,
                 JmolList<java.lang.String> vNormals)

outputIndices

protected void outputIndices(int[][] indices,
                 int[] map,
                 int nPolygons,
                 BS bsPolygons,
                 int faceVertexMax)

outputFace

protected abstract void outputFace(int[] is,
              int[] coordMap,
              int faceVertexMax)

outputCircle

protected abstract void outputCircle(P3 pt1,
                P3 pt2,
                float radius,
                short colix,
                boolean doFill)

outputCone

protected abstract void outputCone(P3 ptBase,
              P3 ptTip,
              float radius,
              short colix)

outputCylinder

protected abstract boolean outputCylinder(P3 ptCenter,
                     P3 pt1,
                     P3 pt2,
                     short colix1,
                     byte endcaps,
                     float radius,
                     P3 ptX,
                     P3 ptY,
                     boolean checkRadius)

outputEllipsoid

protected abstract void outputEllipsoid(P3 center,
                   P3[] points,
                   short colix)

outputSphere

protected abstract void outputSphere(P3 ptAtom2,
                float f,
                short colix,
                boolean checkRadius)

outputTextPixel

protected abstract void outputTextPixel(P3 pt,
                   int argb)

outputTriangle

protected abstract void outputTriangle(P3 pt1,
                  P3 pt2,
                  P3 pt3,
                  short colix)

drawAtom

void drawAtom(Atom atom)

Specified by:

drawAtom in class ___Exporter

drawCircle

void drawCircle(int x,
              int y,
              int z,
              int diameter,
              short colix,
              boolean doFill)

Specified by:

drawCircle in class ___Exporter

drawEllipse

boolean drawEllipse(P3 ptCenter,
                  P3 ptX,
                  P3 ptY,
                  short colix,
                  boolean doFill)

Specified by:

drawEllipse in class ___Exporter

drawPixel

void drawPixel(short colix,
             int x,
             int y,
             int z,
             int scale)

Specified by:

drawPixel in class ___Exporter

drawTextPixel

void drawTextPixel(int argb,
                 int x,
                 int y,
                 int z)

Specified by:

drawTextPixel in class ___Exporter

fillConeScreen

void fillConeScreen(short colix,
                  byte endcap,
                  int screenDiameter,
                  P3 screenBase,
                  P3 screenTip,
                  boolean isBarb)

Specified by:

fillConeScreen in class ___Exporter

drawCylinder

void drawCylinder(P3 ptA,
                P3 ptB,
                short colix1,
                short colix2,
                byte endcaps,
                int mad,
                int bondOrder)

bond order -1 -- single bond, Cartesian bond order -2 -- multiple bond, Cartesian

Specified by:

drawCylinder in class ___Exporter

fillCylinderScreenMad

void fillCylinderScreenMad(short colix,
                         byte endcaps,
                         int mad,
                         P3 screenA,
                         P3 screenB)

Specified by:

fillCylinderScreenMad in class ___Exporter

fillCylinderScreen

void fillCylinderScreen(short colix,
                      byte endcaps,
                      int screenDiameter,
                      P3 screenA,
                      P3 screenB)

Specified by:

fillCylinderScreen in class ___Exporter

fillEllipsoid

void fillEllipsoid(P3 center,
                 P3[] points,
                 short colix,
                 int x,
                 int y,
                 int z,
                 int diameter,
                 Matrix3f toEllipsoidal,
                 double[] coef,
                 Matrix4f deriv,
                 P3i[] octantPoints)

Specified by:

fillEllipsoid in class ___Exporter

fillSphere

void fillSphere(short colix,
              int diameter,
              P3 pt)

Specified by:

fillSphere in class ___Exporter

fillTriangle

protected void fillTriangle(short colix,
                P3 ptA,
                P3 ptB,
                P3 ptC,
                boolean twoSided)

Specified by:

fillTriangle in class ___Exporter

plotImage

void plotImage(int x,
             int y,
             int z,
             java.awt.Image image,
             short bgcolix,
             int width,
             int height)

Overrides:

plotImage in class ___Exporter

plotText

void plotText(int x,
            int y,
            int z,
            short colix,
            java.lang.String text,
            JmolFont font3d)

Overrides:

plotText in class ___Exporter

setSphereMatrix

protected void setSphereMatrix(Tuple3f center,
                   float rx,
                   float ry,
                   float rz,
                   AxisAngle4f a,
                   Matrix4f sphereMatrix)