HDF5CF::GMFile Class Reference

This class is a derived class of File. It includes methods applied to general HDF5 files only. More...

#include <HDF5CF.h>

Inheritance diagram for HDF5CF::GMFile:

Collaboration diagram for HDF5CF::GMFile:

Public Member Functions
void	Add_Dim_Name () throw (Exception)
	Add dimension name. More...
void	Add_Supplement_Attrs (bool) throw (Exception)
	Add supplemental attributes such as fullpath and original name for general NASA HDF5 products. More...
void	Adjust_Dim_Name () throw (Exception)
	Adjust dimension name for general NASA HDF5 products. More...
void	Adjust_H5_Attr_Value (Attribute *attr) throw (Exception)
	Adjust attribute values for general HDF5 products. More...
void	Adjust_Obj_Name () throw (Exception)
	Adjust object names based on different general NASA HDF5 products. More...
void	Flatten_Obj_Name (bool include_attr) throw (Exception)
	Flatten the object name for general NASA HDF5 products. More...
const vector< Attribute * > &	getAttributes () const
	Public interface to obtain information of all attributes under the root group. More...
const vector< GMCVar * > &	getCVars () const
const hid_t	getFileID () const
	Obtain the HDF5 file ID. More...
const vector< Group * > &	getGroups () const
	Public interface to obtain all the group info. More...
const string &	getPath () const
	Obtain the path of the file. More...
H5GCFProduct	getProductType () const
const vector< GMSPVar * > &	getSPVars () const
const vector< Var * > &	getVars () const
	Public interface to obtain information of all variables. More...
	GMFile (const char *path, hid_t file_id, H5GCFProduct product, GMPattern gproduct_pattern)
void	Handle_Coor_Attr ()
	Handle "coordinates" attributes for general HDF5 products. More...
void	Handle_CVar () throw (Exception)
	Handle coordinate variables for general NASA HDF5 products. More...
void	Handle_DimNameClashing () throw (Exception)
	Handle dimension name clashing. Since COARDS requires the change of cv names, So we need to handle dimension name clashing specially. More...
void	Handle_Obj_NameClashing (bool) throw (Exception)
	Handle object name clashing for general NASA HDF5 products. More...
void	Handle_SpVar () throw (Exception)
	Handle special variables for general NASA HDF5 products. More...
void	Handle_SpVar_Attr () throw (Exception)
	Handle special variable attributes for general NASA HDF5 products. More...
void	Handle_Unsupported_Dspace () throw (Exception)
	Handle unsupported HDF5 dataspaces for general HDF5 products. More...
void	Handle_Unsupported_Dtype (bool) throw (Exception)
	Handle unsupported HDF5 datatypes for general HDF5 products. More...
void	Retrieve_H5_Info (const char *path, hid_t file_id, bool include_attr) throw (Exception)
	Retrieve DDS information from the HDF5 file; real implementation for general HDF5 products. More...
void	Retrieve_H5_Supported_Attr_Values () throw (Exception)
	Retrieve attribute values for the supported HDF5 datatypes for general HDF5 products. More...
virtual	~GMFile ()

Protected Member Functions
void	Add_Aqu_Attrs () throw (Exception)
void	Add_Dim_Name_ACOS_L2S () throw (Exception)
void	Add_Dim_Name_Aqu_L3 () throw (Exception)
void	Add_Dim_Name_Dimscale_General_Product () throw (Exception)
void	Add_Dim_Name_General_Product () throw (Exception)
void	Add_Dim_Name_GPM () throw (Exception)
void	Add_Dim_Name_Mea_Ozonel3z () throw (Exception)
void	Add_Dim_Name_Mea_SeaWiFS () throw (Exception)
void	Add_Dim_Name_OBPG_L3 () throw (Exception)
void	Add_Dim_Name_SMAP () throw (Exception)
void	Add_GPM_Attrs () throw (Exception)
void	Add_One_FakeDim_Name (Dimension *dim) throw (Exception)
void	Add_One_Float_Attr (Attribute *attr, const string &attrname, float float_value) throw (Exception)
void	Add_SeaWiFS_Attrs () throw (Exception)
void	Add_Str_Attr (Attribute *attr, const string &attrname, const string &strvalue) throw (Exception)
void	Add_UseDimscale_Var_Dim_Names_General_Product (Var *, Attribute *) throw (Exception)
void	Add_UseDimscale_Var_Dim_Names_Mea_SeaWiFS_Ozone (Var *, Attribute *) throw (Exception)
void	Adjust_Duplicate_FakeDim_Name (Dimension *dim) throw (Exception)
void	Adjust_GPM_L3_Obj_Name () throw (Exception)
void	Adjust_Mea_Ozone_Obj_Name () throw (Exception)
void	Change_Attr_One_Str_to_Others (Attribute *attr, Var *var) throw (Exception)
bool	check_cv (string &varname) throw (Exception)
void	Check_General_Product_Pattern () throw (Exception)
void	Create_Missing_CV (GMCVar *, const string &) throw (Exception)
string	get_CF_string (string s)
template<typename T >
void	GMHandle_General_NameClashing (set< string > &objnameset, vector< T * > &objvec) throw (Exception)
void	Handle_CVar_Aqu_L3 () throw (Exception)
void	Handle_CVar_Dimscale_General_Product () throw (Exception)
void	Handle_CVar_GPM_L1 () throw (Exception)
void	Handle_CVar_GPM_L3 () throw (Exception)
void	Handle_CVar_Mea_Ozone () throw (Exception)
void	Handle_CVar_Mea_SeaWiFS () throw (Exception)
void	Handle_CVar_OBPG_L3 () throw (Exception)
void	Handle_CVar_SMAP () throw (Exception)
template<typename T >
void	Handle_General_NameClashing (set< string > &objnameset, vector< T * > &objvec) throw (Exception)
void	Handle_GeneralObj_NameClashing (bool, set< string > &objnameset) throw (Exception)
void	Handle_GMCVar_AttrNameClashing () throw (Exception)
void	Handle_GMCVar_NameClashing (set< string > &) throw (Exception)
void	Handle_GMSPVar_AttrNameClashing () throw (Exception)
void	Handle_GMSPVar_NameClashing (set< string > &) throw (Exception)
void	Handle_GPM_l1_Coor_Attr () throw (Exception)
void	Handle_Obj_AttrNameClashing () throw (Exception)
void	Handle_RootGroup_NameClashing (set< string > &objnameset) throw (Exception)
void	Handle_SpVar_ACOS () throw (Exception)
void	Handle_UseDimscale_Var_Dim_Names_General_Product (Var *) throw (Exception)
void	Handle_UseDimscale_Var_Dim_Names_Mea_SeaWiFS_Ozone (Var *) throw (Exception)
void	Handle_Var_NameClashing (set< string > &objnameset) throw (Exception)
void	Insert_One_NameSizeMap_Element (string name, hsize_t size) throw (Exception)
void	Insert_One_NameSizeMap_Element2 (map< string, hsize_t > &, string name, hsize_t size) throw (Exception)
bool	Is_netCDF_Dimension (Var *var) throw (Exception)
virtual void	Replace_Var_Attrs (Var *src, Var *target)
virtual void	Replace_Var_Info (Var *src, Var *target)
void	Retrieve_H5_Attr_Info (Attribute *, hid_t obj_id, const int j, bool &unsup_attr_dtype) throw (Exception)
void	Retrieve_H5_Attr_Value (Attribute *attr, string) throw (Exception)
void	Retrieve_H5_Obj (hid_t grp_id, const char *gname, bool include_attr) throw (Exception)
void	Retrieve_H5_VarDim (Var *, hid_t dset_id, const string &varname, bool &unsup_var_dspace) throw (Exception)
void	Retrieve_H5_VarType (Var *, hid_t dset_id, const string &varname, bool &unsup_var_dtype) throw (Exception)

Protected Attributes
int	addeddimindex
map< string, hsize_t >	dimname_to_dimsize
set< string >	dimnamelist
map< hsize_t, string >	dimsize_to_fakedimname
	Handle added dimension names. More...
hid_t	fileid
vector< Group * >	groups
	Non-root group vectors. More...
string	path
vector< Attribute * >	root_attrs
	Root attribute vectors. More...
hid_t	rootid
bool	unsupported_attr_dtype
bool	unsupported_var_dspace
bool	unsupported_var_dtype
vector< Var * >	vars
	Var vectors. More...

Detailed Description

This class is a derived class of File. It includes methods applied to general HDF5 files only.

Definition at line 662 of file HDF5CF.h.

Constructor & Destructor Documentation

GMFile::GMFile	(	const char *	path,
		hid_t	file_id,
		H5GCFProduct	product,
		GMPattern	gproduct_pattern
	)

Definition at line 105 of file HDF5GMCF.cc.

GMFile::~GMFile ( )

virtual

Definition at line 111 of file HDF5GMCF.cc.

Member Function Documentation

void GMFile::Add_Aqu_Attrs ( ) throw ( Exception )

protected

Definition at line 2488 of file HDF5GMCF.cc.

References HDF5CF::File::Add_One_Float_Attr(), HDF5CF::File::Add_Str_Attr(), HDF5CF::File::Retrieve_H5_Attr_Value(), HDF5CF::File::root_attrs, and HDF5CF::File::vars.

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void GMFile::Add_Dim_Name	(		)
throw	(	Exception
	)

Add dimension name.

Definition at line 278 of file HDF5GMCF.cc.

References ACOS_L2S, Add_Dim_Name_ACOS_L2S(), Add_Dim_Name_Aqu_L3(), Add_Dim_Name_General_Product(), Add_Dim_Name_GPM(), Add_Dim_Name_Mea_Ozonel3z(), Add_Dim_Name_Mea_SeaWiFS(), Add_Dim_Name_OBPG_L3(), Add_Dim_Name_SMAP(), Aqu_L3, General_Product, GPM_L1, GPMM_L3, GPMS_L3, Mea_Ozone, Mea_SeaWiFS_L2, Mea_SeaWiFS_L3, OBPG_L3, SMAP, throw1, and HDF5CF::File::vars.

Referenced by map_gmh5_cfdas(), and map_gmh5_cfdds().

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void GMFile::Add_Dim_Name_ACOS_L2S ( ) throw ( Exception )

protected

Definition at line 898 of file HDF5GMCF.cc.

References HDF5CF::File::Add_One_FakeDim_Name(), HDF5CF::File::Adjust_Duplicate_FakeDim_Name(), and HDF5CF::File::vars.

Referenced by Add_Dim_Name().

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void GMFile::Add_Dim_Name_Aqu_L3 ( ) throw ( Exception )

protected

Definition at line 805 of file HDF5GMCF.cc.

References HDF5CF::File::vars.

Referenced by Add_Dim_Name().

void GMFile::Add_Dim_Name_Dimscale_General_Product ( ) throw ( Exception )

protected

Definition at line 981 of file HDF5GMCF.cc.

References HDF5CF::File::dimnamelist, Handle_UseDimscale_Var_Dim_Names_General_Product(), HDF5CF::File::Insert_One_NameSizeMap_Element(), throw1, and HDF5CF::File::vars.

Referenced by Add_Dim_Name_General_Product().

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void GMFile::Add_Dim_Name_General_Product ( ) throw ( Exception )

protected

Definition at line 914 of file HDF5GMCF.cc.

References Add_Dim_Name_Dimscale_General_Product(), Check_General_Product_Pattern(), and GENERAL_DIMSCALE.

Referenced by Add_Dim_Name(), and Add_Dim_Name_OBPG_L3().

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void GMFile::Add_Dim_Name_GPM ( ) throw ( Exception )

protected

Definition at line 714 of file HDF5GMCF.cc.

References HDF5CF::File::Add_One_FakeDim_Name(), HDF5CF::File::dimname_to_dimsize, HDF5CF::File::dimnamelist, HDF5CF::File::Insert_One_NameSizeMap_Element(), HDF5CF::File::Retrieve_H5_Attr_Value(), HDF5CFUtil::Split(), throw2, throw4, throw5, and HDF5CF::File::vars.

Referenced by Add_Dim_Name().

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void GMFile::Add_Dim_Name_Mea_Ozonel3z ( ) throw ( Exception )

protected

Definition at line 553 of file HDF5GMCF.cc.

References HDF5CF::File::Add_One_FakeDim_Name(), HDF5CF::File::Adjust_Duplicate_FakeDim_Name(), check_cv(), HDF5CF::File::dimnamelist, HDF5CF::File::groups, Handle_UseDimscale_Var_Dim_Names_Mea_SeaWiFS_Ozone(), HDF5CF::File::Insert_One_NameSizeMap_Element(), throw1, throw3, and HDF5CF::File::vars.

Referenced by Add_Dim_Name().

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void GMFile::Add_Dim_Name_Mea_SeaWiFS ( ) throw ( Exception )

protected

Definition at line 328 of file HDF5GMCF.cc.

References HDF5CF::File::dimnamelist, Handle_UseDimscale_Var_Dim_Names_Mea_SeaWiFS_Ozone(), HDF5CF::File::Insert_One_NameSizeMap_Element(), Mea_SeaWiFS_L3, throw1, and HDF5CF::File::vars.

Referenced by Add_Dim_Name().

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void GMFile::Add_Dim_Name_OBPG_L3 ( ) throw ( Exception )

protected

Definition at line 323 of file HDF5GMCF.cc.

References Add_Dim_Name_General_Product().

Referenced by Add_Dim_Name().

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void GMFile::Add_Dim_Name_SMAP ( ) throw ( Exception )

protected

Definition at line 831 of file HDF5GMCF.cc.

References HDF5CF::File::Add_One_FakeDim_Name(), HDF5CF::File::Adjust_Duplicate_FakeDim_Name(), HDF5CF::File::dimnamelist, HDF5CF::File::Insert_One_NameSizeMap_Element(), throw1, and HDF5CF::File::vars.

Referenced by Add_Dim_Name().

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void GMFile::Add_GPM_Attrs ( ) throw ( Exception )

protected

Definition at line 2189 of file HDF5GMCF.cc.

References HDF5CF::File::Add_One_Float_Attr(), HDF5CF::File::Add_Str_Attr(), HDF5CF::File::Change_Attr_One_Str_to_Others(), comment, CV_EXIST, CV_NONLATLON_MISS, CV_SPECIAL, GPM_L1, GPMM_L3, GPMS_L3, H5FLOAT32, H5FSTRING, and HDF5CF::File::vars.

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void File::Add_One_FakeDim_Name ( Dimension *  dim ) throw ( Exception )

protectedinherited

Definition at line 1077 of file HDF5CF.cc.

References HDF5CFUtil::gen_unique_name(), throw2, and throw4.

Referenced by Add_Dim_Name_ACOS_L2S(), Add_Dim_Name_GPM(), Add_Dim_Name_Mea_Ozonel3z(), and Add_Dim_Name_SMAP().

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void File::Add_One_Float_Attr ( Attribute *  attr, const string &  attrname, float  float_value  ) throw ( Exception )

protectedinherited

Definition at line 1177 of file HDF5CF.cc.

References H5FLOAT32.

Referenced by Add_Aqu_Attrs(), Add_GPM_Attrs(), and Add_SeaWiFS_Attrs().

void GMFile::Add_SeaWiFS_Attrs ( ) throw ( Exception )

protected

Definition at line 2580 of file HDF5GMCF.cc.

References HDF5CF::File::Add_One_Float_Attr(), H5FLOAT32, and HDF5CF::File::vars.

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void File::Add_Str_Attr ( Attribute *  attr, const string &  attrname, const string &  strvalue  ) throw ( Exception )

protectedinherited

Definition at line 1163 of file HDF5CF.cc.

References H5FSTRING.

Referenced by Add_Aqu_Attrs(), Add_GPM_Attrs(), Handle_Coor_Attr(), HDF5CF::EOS5File::Handle_Coor_Attr(), HDF5CF::EOS5File::Handle_EOS5CVar_Unit_Attr(), and Handle_GPM_l1_Coor_Attr().

void GMFile::Add_Supplement_Attrs ( bool  add_path ) throw ( Exception )

virtual

Add supplemental attributes such as fullpath and original name for general NASA HDF5 products.

Reimplemented from HDF5CF::File.

Definition at line 2132 of file HDF5GMCF.cc.

References HDF5CF::File::Add_Supplement_Attrs(), Aqu_L3, CV_EXIST, CV_MODIFY, General_Product, GPM_L1, GPMM_L3, GPMS_L3, Mea_SeaWiFS_L2, and Mea_SeaWiFS_L3.

Referenced by map_gmh5_cfdas().

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void GMFile::Add_UseDimscale_Var_Dim_Names_General_Product ( Var *  var, Attribute *  dimlistattr  ) throw ( Exception )

protected

Definition at line 1069 of file HDF5GMCF.cc.

References NULL, throw2, and throw4.

void GMFile::Add_UseDimscale_Var_Dim_Names_Mea_SeaWiFS_Ozone ( Var *  var, Attribute *  dimlistattr  ) throw ( Exception )

protected

Definition at line 426 of file HDF5GMCF.cc.

References NULL, throw2, and throw4.

void GMFile::Adjust_Dim_Name ( ) throw ( Exception )

virtual

Adjust dimension name for general NASA HDF5 products.

Implements HDF5CF::File.

Definition at line 2078 of file HDF5GMCF.cc.

References throw3, and HDF5CF::File::vars.

Referenced by map_gmh5_cfdds().

void File::Adjust_Duplicate_FakeDim_Name ( Dimension *  dim ) throw ( Exception )

protectedinherited

Definition at line 1130 of file HDF5CF.cc.

References HDF5CFUtil::gen_unique_name(), and throw2.

Referenced by Add_Dim_Name_ACOS_L2S(), Add_Dim_Name_Mea_Ozonel3z(), and Add_Dim_Name_SMAP().

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void GMFile::Adjust_GPM_L3_Obj_Name ( ) throw ( Exception )

protected

Definition at line 1799 of file HDF5GMCF.cc.

References HDF5CF::File::groups, HDF5CFUtil::obtain_string_after_lastslash(), and HDF5CF::File::vars.

Referenced by Adjust_Obj_Name().

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void GMFile::Adjust_H5_Attr_Value	(	Attribute *	attr	)
throw	(	Exception
	)

Adjust attribute values for general HDF5 products.

Definition at line 178 of file HDF5GMCF.cc.

References ACOS_L2S, and H5VSTRING.

Referenced by Retrieve_H5_Supported_Attr_Values().

void GMFile::Adjust_Mea_Ozone_Obj_Name ( ) throw ( Exception )

protected

Definition at line 1825 of file HDF5GMCF.cc.

References HDF5CFUtil::obtain_string_after_lastslash(), and HDF5CF::File::vars.

Referenced by Adjust_Obj_Name().

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void GMFile::Adjust_Obj_Name ( ) throw ( Exception )

virtual

Adjust object names based on different general NASA HDF5 products.

Implements HDF5CF::File.

Definition at line 1777 of file HDF5GMCF.cc.

References Adjust_GPM_L3_Obj_Name(), Adjust_Mea_Ozone_Obj_Name(), GPMM_L3, GPMS_L3, Mea_Ozone, and HDF5CF::File::vars.

Referenced by map_gmh5_cfdas(), and map_gmh5_cfdds().

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void File::Change_Attr_One_Str_to_Others ( Attribute *  attr, Var *  var  ) throw ( Exception )

protectedinherited

Definition at line 1187 of file HDF5CF.cc.

References H5CHAR, H5FLOAT32, H5FLOAT64, H5FSTRING, H5INT16, H5INT32, H5UCHAR, H5UINT16, H5UINT32, NULL, throw2, throw4, and throw5.

Referenced by Add_GPM_Attrs().

bool GMFile::check_cv ( string &  varname ) throw ( Exception )

protected

Definition at line 692 of file HDF5GMCF.cc.

Referenced by Add_Dim_Name_Mea_Ozonel3z().

void GMFile::Check_General_Product_Pattern ( ) throw ( Exception )

protected

Definition at line 925 of file HDF5GMCF.cc.

References GENERAL_DIMSCALE, HDF5CF::File::Retrieve_H5_Attr_Value(), and HDF5CF::File::vars.

Referenced by Add_Dim_Name_General_Product().

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void GMFile::Create_Missing_CV ( GMCVar *  GMcvar, const string &  dimname  ) throw ( Exception )

protected

Definition at line 2889 of file HDF5GMCF.cc.

References CV_NONLATLON_MISS, H5INT32, HDF5CF::Dimension::name, and HDF5CF::Dimension::newname.

Referenced by Handle_CVar_Dimscale_General_Product(), Handle_CVar_GPM_L1(), Handle_CVar_GPM_L3(), Handle_CVar_Mea_Ozone(), Handle_CVar_Mea_SeaWiFS(), and Handle_CVar_SMAP().

void GMFile::Flatten_Obj_Name ( bool  include_attr ) throw ( Exception )

virtual

Flatten the object name for general NASA HDF5 products.

Reimplemented from HDF5CF::File.

Definition at line 1860 of file HDF5GMCF.cc.

References HDF5CF::File::Flatten_Obj_Name().

Referenced by map_gmh5_cfdas(), and map_gmh5_cfdds().

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string GMFile::get_CF_string ( string  s )

protectedvirtual

Reimplemented from HDF5CF::File.

Definition at line 128 of file HDF5GMCF.cc.

References General_Product, HDF5CF::File::get_CF_string(), and OTHERGMS.

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const vector< Attribute * >& HDF5CF::File::getAttributes ( ) const

inlineinherited

Public interface to obtain information of all attributes under the root group.

Definition at line 578 of file HDF5CF.h.

References HDF5CF::File::root_attrs.

Referenced by gen_eos5_cfdas(), and gen_gmh5_cfdas().

const vector<GMCVar *>& HDF5CF::GMFile::getCVars ( ) const

inline

Definition at line 671 of file HDF5CF.h.

Referenced by gen_gmh5_cfdas(), and gen_gmh5_cfdds().

const hid_t HDF5CF::File::getFileID ( ) const

inlineinherited

Obtain the HDF5 file ID.

Definition at line 559 of file HDF5CF.h.

References HDF5CF::File::fileid.

Referenced by gen_eos5_cfdds(), and gen_gmh5_cfdds().

const vector< Group * >& HDF5CF::File::getGroups ( ) const

inlineinherited

Public interface to obtain all the group info.

Definition at line 584 of file HDF5CF.h.

References HDF5CF::File::groups.

Referenced by gen_eos5_cfdas(), and gen_gmh5_cfdas().

const string& HDF5CF::File::getPath ( ) const

inlineinherited

Obtain the path of the file.

Definition at line 566 of file HDF5CF.h.

References HDF5CF::File::path.

Referenced by gen_eos5_cfdds(), and gen_gmh5_cfdds().

H5GCFProduct HDF5CF::GMFile::getProductType ( ) const

inline

Definition at line 667 of file HDF5CF.h.

Referenced by gen_gmh5_cfdas().

const vector<GMSPVar *>& HDF5CF::GMFile::getSPVars ( ) const

inline

Definition at line 675 of file HDF5CF.h.

Referenced by gen_gmh5_cfdas(), and gen_gmh5_cfdds().

const vector< Var * >& HDF5CF::File::getVars ( ) const

inlineinherited

Public interface to obtain information of all variables.

Definition at line 572 of file HDF5CF.h.

References HDF5CF::File::vars.

Referenced by gen_eos5_cfdas(), gen_eos5_cfdds(), gen_gmh5_cfdas(), and gen_gmh5_cfdds().

template<class T >

void GMFile::GMHandle_General_NameClashing ( set< string > &  objnameset, vector< T * > &  objvec  ) throw ( Exception )

protected

Definition at line 1966 of file HDF5GMCF.cc.

References HDF5CFUtil::gen_unique_name().

Referenced by Handle_DimNameClashing().

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void GMFile::Handle_Coor_Attr ( )

virtual

Handle "coordinates" attributes for general HDF5 products.

Implements HDF5CF::File.

Definition at line 2618 of file HDF5GMCF.cc.

References HDF5CF::File::Add_Str_Attr(), CV_LAT_MISS, CV_LON_MISS, CV_NONLATLON_MISS, GPM_L1, Handle_GPM_l1_Coor_Attr(), Mea_SeaWiFS_L2, SMAP, and HDF5CF::File::vars.

Referenced by map_gmh5_cfdas().

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void GMFile::Handle_CVar ( ) throw ( Exception )

virtual

Handle coordinate variables for general NASA HDF5 products.

Implements HDF5CF::File.

Definition at line 1197 of file HDF5GMCF.cc.

References ACOS_L2S, Aqu_L3, GENERAL_DIMSCALE, General_Product, GPM_L1, GPMM_L3, GPMS_L3, Handle_CVar_Aqu_L3(), Handle_CVar_Dimscale_General_Product(), Handle_CVar_GPM_L1(), Handle_CVar_GPM_L3(), Handle_CVar_Mea_Ozone(), Handle_CVar_Mea_SeaWiFS(), Handle_CVar_OBPG_L3(), Handle_CVar_SMAP(), Mea_Ozone, Mea_SeaWiFS_L2, Mea_SeaWiFS_L3, OBPG_L3, and SMAP.

Referenced by map_gmh5_cfdas(), and map_gmh5_cfdds().

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void GMFile::Handle_CVar_Aqu_L3 ( ) throw ( Exception )

protected

Definition at line 1497 of file HDF5GMCF.cc.

References CV_LAT_MISS, CV_LON_MISS, HDF5CF::Var::dims, HDF5CF::Var::dtype, HDF5CF::Var::fullpath, H5FLOAT32, HDF5CF::Dimension::name, HDF5CF::Var::name, HDF5CF::Dimension::newname, HDF5CF::Var::newname, HDF5CF::Var::rank, and HDF5CF::File::vars.

Referenced by Handle_CVar().

void GMFile::Handle_CVar_Dimscale_General_Product ( ) throw ( Exception )

protected

Definition at line 1570 of file HDF5GMCF.cc.

References Create_Missing_CV(), CV_EXIST, CV_FILLINDEX, HDF5CF::File::dimnamelist, Is_netCDF_Dimension(), throw1, throw3, and HDF5CF::File::vars.

Referenced by Handle_CVar(), and Handle_CVar_OBPG_L3().

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void GMFile::Handle_CVar_GPM_L1 ( ) throw ( Exception )

protected

Definition at line 1227 of file HDF5GMCF.cc.

References Create_Missing_CV(), CV_EXIST, HDF5CF::File::dimname_to_dimsize, HDF5CF::File::Insert_One_NameSizeMap_Element(), and HDF5CF::File::vars.

Referenced by Handle_CVar().

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void GMFile::Handle_CVar_GPM_L3 ( ) throw ( Exception )

protected

Definition at line 1313 of file HDF5GMCF.cc.

References Create_Missing_CV(), CV_LAT_MISS, CV_LON_MISS, CV_SPECIAL, HDF5CF::File::dimname_to_dimsize, HDF5CF::Var::dims, HDF5CF::Var::dtype, HDF5CF::Var::fullpath, H5FLOAT32, HDF5CF::Dimension::name, HDF5CF::Var::name, HDF5CF::Dimension::newname, HDF5CF::Var::newname, and HDF5CF::Var::rank.

Referenced by Handle_CVar().

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void GMFile::Handle_CVar_Mea_Ozone ( ) throw ( Exception )

protected

Definition at line 1527 of file HDF5GMCF.cc.

References Create_Missing_CV(), CV_EXIST, HDF5CF::File::dimnamelist, throw1, throw3, and HDF5CF::File::vars.

Referenced by Handle_CVar().

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void GMFile::Handle_CVar_Mea_SeaWiFS ( ) throw ( Exception )

protected

Definition at line 1368 of file HDF5GMCF.cc.

References Create_Missing_CV(), CV_EXIST, HDF5CF::File::dimnamelist, throw3, and HDF5CF::File::vars.

Referenced by Handle_CVar().

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void GMFile::Handle_CVar_OBPG_L3 ( ) throw ( Exception )

protected

Definition at line 1621 of file HDF5GMCF.cc.

References CV_FILLINDEX, CV_LAT_MISS, CV_LON_MISS, GENERAL_DIMSCALE, H5FLOAT32, Handle_CVar_Dimscale_General_Product(), and HDF5CF::File::vars.

Referenced by Handle_CVar().

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void GMFile::Handle_CVar_SMAP ( ) throw ( Exception )

protected

Definition at line 1426 of file HDF5GMCF.cc.

References Create_Missing_CV(), CV_EXIST, HDF5CF::File::dimnamelist, HDF5CF::Var::name, HDF5CF::Var::newname, throw5, and HDF5CF::File::vars.

Referenced by Handle_CVar().

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void GMFile::Handle_DimNameClashing ( ) throw ( Exception )

virtual

Handle dimension name clashing. Since COARDS requires the change of cv names, So we need to handle dimension name clashing specially.

Implements HDF5CF::File.

Definition at line 2011 of file HDF5GMCF.cc.

References ACOS_L2S, GMHandle_General_NameClashing(), throw4, and HDF5CF::File::vars.

Referenced by map_gmh5_cfdds().

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template<class T >

void File::Handle_General_NameClashing ( set< string > &  objnameset, vector< T * > &  objvec  ) throw ( Exception )

protectedinherited

Definition at line 971 of file HDF5CF.cc.

References HDF5CFUtil::gen_unique_name().

Referenced by HDF5CF::EOS5File::Handle_EOS5CVar_AttrNameClashing(), Handle_GMCVar_AttrNameClashing(), Handle_GMSPVar_AttrNameClashing(), and HDF5CF::File::Handle_Obj_AttrNameClashing().

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void File::Handle_GeneralObj_NameClashing ( bool  include_attr, set< string > &  objnameset  ) throw ( Exception )

protectedinherited

Definition at line 1016 of file HDF5CF.cc.

Referenced by Handle_Obj_NameClashing(), and HDF5CF::EOS5File::Handle_Obj_NameClashing().

void GMFile::Handle_GMCVar_AttrNameClashing ( ) throw ( Exception )

protected

Definition at line 1943 of file HDF5GMCF.cc.

References HDF5CF::File::Handle_General_NameClashing().

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void GMFile::Handle_GMCVar_NameClashing ( set< string > &  objnameset ) throw ( Exception )

protected

Definition at line 1932 of file HDF5GMCF.cc.

void GMFile::Handle_GMSPVar_AttrNameClashing ( ) throw ( Exception )

protected

Definition at line 1953 of file HDF5GMCF.cc.

References HDF5CF::File::Handle_General_NameClashing().

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void GMFile::Handle_GMSPVar_NameClashing ( set< string > &  objnameset ) throw ( Exception )

protected

Definition at line 1937 of file HDF5GMCF.cc.

void GMFile::Handle_GPM_l1_Coor_Attr ( ) throw ( Exception )

protected

Definition at line 2706 of file HDF5GMCF.cc.

References HDF5CF::File::Add_Str_Attr(), HDF5CFUtil::obtain_string_after_lastslash(), throw2, throw4, and HDF5CF::File::vars.

Referenced by Handle_Coor_Attr().

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void File::Handle_Obj_AttrNameClashing ( ) throw ( Exception )

protectedinherited

Definition at line 939 of file HDF5CF.cc.

References HDF5CF::File::groups, HDF5CF::File::Handle_General_NameClashing(), HDF5CF::File::root_attrs, and HDF5CF::File::vars.

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void GMFile::Handle_Obj_NameClashing	(	bool	include_attr	)
throw	(	Exception
	)

Handle object name clashing for general NASA HDF5 products.

Definition at line 1914 of file HDF5GMCF.cc.

References HDF5CF::File::Handle_GeneralObj_NameClashing().

Referenced by map_gmh5_cfdas(), and map_gmh5_cfdds().

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void File::Handle_RootGroup_NameClashing ( set< string > &  objnameset ) throw ( Exception )

protectedinherited

Definition at line 911 of file HDF5CF.cc.

References HDF5CFUtil::gen_unique_name().

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void GMFile::Handle_SpVar ( ) throw ( Exception )

virtual

Handle special variables for general NASA HDF5 products.

Implements HDF5CF::File.

Definition at line 1697 of file HDF5GMCF.cc.

References ACOS_L2S, GPM_L1, GPMM_L3, GPMS_L3, Handle_SpVar_ACOS(), and HDF5CF::File::vars.

Referenced by map_gmh5_cfdas(), and map_gmh5_cfdds().

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void GMFile::Handle_SpVar_ACOS ( ) throw ( Exception )

protected

Definition at line 1738 of file HDF5GMCF.cc.

References HDF5CF::Var::dtype, H5INT32, H5INT64, HDF5CF::Var::name, HDF5CF::Var::newname, and HDF5CF::File::vars.

Referenced by Handle_SpVar().

void GMFile::Handle_SpVar_Attr ( ) throw ( Exception )

virtual

Handle special variable attributes for general NASA HDF5 products.

Implements HDF5CF::File.

Definition at line 2936 of file HDF5GMCF.cc.

void GMFile::Handle_Unsupported_Dspace ( ) throw ( Exception )

virtual

Handle unsupported HDF5 dataspaces for general HDF5 products.

Reimplemented from HDF5CF::File.

Definition at line 246 of file HDF5GMCF.cc.

References HDF5CF::File::Handle_Unsupported_Dspace(), and HDF5CF::File::unsupported_var_dspace.

Referenced by map_gmh5_cfdas(), and map_gmh5_cfdds().

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void GMFile::Handle_Unsupported_Dtype ( bool  include_attr ) throw ( Exception )

virtual

Handle unsupported HDF5 datatypes for general HDF5 products.

Reimplemented from HDF5CF::File.

Definition at line 194 of file HDF5GMCF.cc.

References HDF5CFUtil::cf_strict_support_type(), and HDF5CF::File::Handle_Unsupported_Dtype().

Referenced by map_gmh5_cfdas(), and map_gmh5_cfdds().

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void GMFile::Handle_UseDimscale_Var_Dim_Names_General_Product ( Var *  var ) throw ( Exception )

protected

Definition at line 1003 of file HDF5GMCF.cc.

References NULL, and throw2.

Referenced by Add_Dim_Name_Dimscale_General_Product().

void GMFile::Handle_UseDimscale_Var_Dim_Names_Mea_SeaWiFS_Ozone ( Var *  var ) throw ( Exception )

protected

Definition at line 351 of file HDF5GMCF.cc.

References NULL, and throw2.

Referenced by Add_Dim_Name_Mea_Ozonel3z(), and Add_Dim_Name_Mea_SeaWiFS().

void File::Handle_Var_NameClashing ( set< string > &  objnameset ) throw ( Exception )

protectedinherited

Definition at line 906 of file HDF5CF.cc.

void File::Insert_One_NameSizeMap_Element ( string  name, hsize_t  size  ) throw ( Exception )

protectedinherited

Definition at line 1044 of file HDF5CF.cc.

References throw4.

Referenced by Add_Dim_Name_Dimscale_General_Product(), Add_Dim_Name_GPM(), Add_Dim_Name_Mea_Ozonel3z(), Add_Dim_Name_Mea_SeaWiFS(), Add_Dim_Name_SMAP(), and Handle_CVar_GPM_L1().

void File::Insert_One_NameSizeMap_Element2 ( map< string, hsize_t > &  name_to_size, string  name, hsize_t  size  ) throw ( Exception )

protectedinherited

Definition at line 1054 of file HDF5CF.cc.

References throw4.

bool GMFile::Is_netCDF_Dimension ( Var *  var ) throw ( Exception )

protected

Definition at line 2908 of file HDF5GMCF.cc.

Referenced by Handle_CVar_Dimscale_General_Product().

void File::Replace_Var_Attrs ( Var *  src, Var *  target  )

protectedvirtualinherited

Definition at line 1424 of file HDF5CF.cc.

References HDF5CF::Var::attrs, HDF5CF::Attribute::count, HDF5CF::Var::dims, HDF5CF::Attribute::dtype, HDF5CF::Attribute::fstrsize, HDF5CF::Attribute::name, HDF5CF::Attribute::newname, HDF5CF::Attribute::strsize, and HDF5CF::Attribute::value.

Referenced by HDF5CF::EOS5File::Replace_Var_Attrs().

void File::Replace_Var_Info ( Var *  src, Var *  target  )

protectedvirtualinherited

Definition at line 1365 of file HDF5CF.cc.

References HDF5CF::Var::attrs, HDF5CF::Attribute::count, HDF5CF::Var::dims, HDF5CF::Attribute::dtype, HDF5CF::Var::dtype, HDF5CF::Attribute::fstrsize, HDF5CF::Var::fullpath, HDF5CF::Dimension::name, HDF5CF::Attribute::name, HDF5CF::Var::name, HDF5CF::Dimension::newname, HDF5CF::Attribute::newname, HDF5CF::Var::newname, HDF5CF::Var::rank, HDF5CF::Attribute::strsize, HDF5CF::Var::unsupported_attr_dtype, HDF5CF::Var::unsupported_dspace, and HDF5CF::Attribute::value.

Referenced by HDF5CF::EOS5File::Replace_Var_Info().

void File::Retrieve_H5_Attr_Info ( Attribute *  attr, hid_t  obj_id, const int  j, bool &  unsup_attr_dtype  ) throw ( Exception )

protectedinherited

Definition at line 461 of file HDF5CF.cc.

References HDF5CFUtil::cf_strict_support_type(), HDF5CFUtil::H5type_to_H5DAPtype(), NULL, throw1, and throw2.

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void File::Retrieve_H5_Attr_Value ( Attribute *  attr, string  obj_name  ) throw ( Exception )

protectedinherited

Definition at line 614 of file HDF5CF.cc.

References H5FSTRING, HDF5CFUtil::H5type_to_H5DAPtype(), H5VSTRING, NULL, throw2, throw4, and HDF5CFUtil::trim_string().

Referenced by Add_Aqu_Attrs(), Add_Dim_Name_GPM(), HDF5CF::EOS5File::Adjust_Attr_Value(), HDF5CF::EOS5File::Check_Aura_Product_Status(), Check_General_Product_Pattern(), HDF5CF::EOS5File::Handle_EOS5CVar_Special_Attr(), HDF5CF::EOS5File::Handle_EOS5CVar_Unit_Attr(), HDF5CF::File::Retrieve_H5_Supported_Attr_Values(), Retrieve_H5_Supported_Attr_Values(), and HDF5CF::EOS5File::Retrieve_H5_Supported_Attr_Values().

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void GMFile::Retrieve_H5_Info ( const char *  path, hid_t  file_id, bool  include_attr  ) throw ( Exception )

virtual

Retrieve DDS information from the HDF5 file; real implementation for general HDF5 products.

Reimplemented from HDF5CF::File.

Definition at line 138 of file HDF5GMCF.cc.

References General_Product, GPM_L1, GPMM_L3, GPMS_L3, Mea_Ozone, Mea_SeaWiFS_L2, Mea_SeaWiFS_L3, OBPG_L3, and HDF5CF::File::Retrieve_H5_Info().

Referenced by map_gmh5_cfdas(), and map_gmh5_cfdds().

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void File::Retrieve_H5_Obj ( hid_t  grp_id, const char *  gname, bool  include_attr  ) throw ( Exception )

protectedinherited

Definition at line 131 of file HDF5CF.cc.

References HDF5CF::Var::attrs, HDF5CF::Group::attrs, HDF5CF::Var::fullpath, HDF5CF::Var::name, HDF5CF::Var::newname, HDF5CF::Group::newname, NULL, HDF5CF::Group::path, throw2, HDF5CF::Var::unsupported_attr_dtype, and HDF5CF::Group::unsupported_attr_dtype.

void GMFile::Retrieve_H5_Supported_Attr_Values ( ) throw ( Exception )

virtual

Retrieve attribute values for the supported HDF5 datatypes for general HDF5 products.

Reimplemented from HDF5CF::File.

Definition at line 152 of file HDF5GMCF.cc.

References Adjust_H5_Attr_Value(), CV_NONLATLON_MISS, HDF5CF::File::Retrieve_H5_Attr_Value(), and HDF5CF::File::Retrieve_H5_Supported_Attr_Values().

Referenced by map_gmh5_cfdas().

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void File::Retrieve_H5_VarDim ( Var *  var, hid_t  dset_id, const string &  varname, bool &  unsup_var_dspace  ) throw ( Exception )

protectedinherited

Definition at line 367 of file HDF5CF.cc.

References throw2.

void File::Retrieve_H5_VarType ( Var *  var, hid_t  dset_id, const string &  varname, bool &  unsup_var_dtype  ) throw ( Exception )

protectedinherited

Definition at line 334 of file HDF5CF.cc.

References HDF5CFUtil::cf_strict_support_type(), HDF5CFUtil::H5type_to_H5DAPtype(), and throw2.

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Member Data Documentation

int HDF5CF::File::addeddimindex

protectedinherited

Definition at line 657 of file HDF5CF.h.

map<string,hsize_t> HDF5CF::File::dimname_to_dimsize

protectedinherited

Definition at line 653 of file HDF5CF.h.

Referenced by Add_Dim_Name_GPM(), Handle_CVar_GPM_L1(), and Handle_CVar_GPM_L3().

set<string> HDF5CF::File::dimnamelist

protectedinherited

Definition at line 652 of file HDF5CF.h.

Referenced by Add_Dim_Name_Dimscale_General_Product(), Add_Dim_Name_GPM(), Add_Dim_Name_Mea_Ozonel3z(), Add_Dim_Name_Mea_SeaWiFS(), Add_Dim_Name_SMAP(), Handle_CVar_Dimscale_General_Product(), Handle_CVar_Mea_Ozone(), Handle_CVar_Mea_SeaWiFS(), and Handle_CVar_SMAP().

map<hsize_t,string> HDF5CF::File::dimsize_to_fakedimname

protectedinherited

Handle added dimension names.

Definition at line 656 of file HDF5CF.h.

hid_t HDF5CF::File::fileid

protectedinherited

Definition at line 635 of file HDF5CF.h.

Referenced by HDF5CF::File::getFileID(), and HDF5CF::File::~File().

vector< Group* > HDF5CF::File::groups

protectedinherited

Non-root group vectors.

Definition at line 645 of file HDF5CF.h.

Referenced by Add_Dim_Name_Mea_Ozonel3z(), Adjust_GPM_L3_Obj_Name(), HDF5CF::EOS5File::Check_Aura_Product_Status(), HDF5CF::File::getGroups(), HDF5CF::EOS5File::Handle_EOS5CVar_Special_Attr(), HDF5CF::File::Handle_Obj_AttrNameClashing(), HDF5CF::File::Retrieve_H5_Supported_Attr_Values(), and HDF5CF::File::~File().

string HDF5CF::File::path

protectedinherited

Definition at line 634 of file HDF5CF.h.

Referenced by HDF5CF::File::getPath().

vector< Attribute * > HDF5CF::File::root_attrs

protectedinherited

Root attribute vectors.

Definition at line 642 of file HDF5CF.h.

Referenced by Add_Aqu_Attrs(), HDF5CF::File::getAttributes(), HDF5CF::File::Handle_Obj_AttrNameClashing(), HDF5CF::File::Retrieve_H5_Supported_Attr_Values(), and HDF5CF::File::~File().

hid_t HDF5CF::File::rootid

protectedinherited

Definition at line 636 of file HDF5CF.h.

Referenced by HDF5CF::File::~File().

bool HDF5CF::File::unsupported_attr_dtype

protectedinherited

Definition at line 648 of file HDF5CF.h.

bool HDF5CF::File::unsupported_var_dspace

protectedinherited

Definition at line 650 of file HDF5CF.h.

Referenced by HDF5CF::File::Handle_Unsupported_Dspace(), Handle_Unsupported_Dspace(), and HDF5CF::EOS5File::Handle_Unsupported_Dspace().

bool HDF5CF::File::unsupported_var_dtype

protectedinherited

Definition at line 647 of file HDF5CF.h.

vector< Var * > HDF5CF::File::vars

protectedinherited

Var vectors.

Definition at line 639 of file HDF5CF.h.

Referenced by Add_Aqu_Attrs(), Add_Dim_Name(), Add_Dim_Name_ACOS_L2S(), Add_Dim_Name_Aqu_L3(), Add_Dim_Name_Dimscale_General_Product(), Add_Dim_Name_GPM(), Add_Dim_Name_Mea_Ozonel3z(), Add_Dim_Name_Mea_SeaWiFS(), Add_Dim_Name_SMAP(), Add_GPM_Attrs(), Add_SeaWiFS_Attrs(), HDF5CF::EOS5File::Adjust_Attr_Name(), HDF5CF::EOS5File::Adjust_Attr_Value(), Adjust_Dim_Name(), HDF5CF::EOS5File::Adjust_Dim_Name(), Adjust_GPM_L3_Obj_Name(), Adjust_Mea_Ozone_Obj_Name(), Adjust_Obj_Name(), HDF5CF::EOS5File::Adjust_SharedLatLon_Grid_Var_Dim_Name(), HDF5CF::EOS5File::Adjust_Var_Dim_NewName_Before_Flattening(), HDF5CF::EOS5File::Adjust_Var_NewName_After_Parsing(), HDF5CF::EOS5File::Check_Augmentation_Status(), Check_General_Product_Pattern(), HDF5CF::File::getVars(), Handle_Coor_Attr(), HDF5CF::EOS5File::Handle_Coor_Attr(), Handle_CVar_Aqu_L3(), Handle_CVar_Dimscale_General_Product(), Handle_CVar_GPM_L1(), Handle_CVar_Mea_Ozone(), Handle_CVar_Mea_SeaWiFS(), Handle_CVar_OBPG_L3(), Handle_CVar_SMAP(), Handle_DimNameClashing(), HDF5CF::EOS5File::Handle_DimNameClashing(), Handle_GPM_l1_Coor_Attr(), HDF5CF::File::Handle_Obj_AttrNameClashing(), Handle_SpVar(), HDF5CF::EOS5File::Handle_SpVar(), Handle_SpVar_ACOS(), HDF5CF::File::Handle_Unsupported_Dspace(), HDF5CF::EOS5File::Remove_MultiDim_LatLon_EOS5CFGrid(), HDF5CF::File::Retrieve_H5_Supported_Attr_Values(), and HDF5CF::File::~File().

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The documentation for this class was generated from the following files:

• HDF5CF.h
• HDF5GMCF.cc