IDSplitter

Splits protein/peptide identifications off of annotated data files.

This performs the reverse operation as IDMapper.

Note

For mzid in-/out- put, due to legacy reason issues you are temporarily asked to use IDFileConverter as a wrapper. The command line parameters of this tool are:

IDSplitter -- Splits protein/peptide identifications off of annotated data files
Version: 2.0.0 Aug 25 2015, 00:02:58, Revision: GIT-NOTFOUND

Usage:
  IDSplitter <options>

Options (mandatory options marked with '*'):
  -in <file>*        Input file (data annotated with identifications) (valid formats: 'mzML', 'featureXML', 
                     'consensusXML')
  -out <file>        Output file (data without identifications). Either 'out' or 'id_out' are required. They 
                     can be used together. (valid formats: 'mzML', 'featureXML', 'consensusXML')
  -id_out <file>     Output file (identifications). Either 'out' or 'id_out' are required. They can be used 
                     together. (valid formats: 'idXML')
                     
Common UTIL options:
  -ini <file>        Use the given TOPP INI file
  -threads <n>       Sets the number of threads allowed to be used by the TOPP tool (default: '1')
  -write_ini <file>  Writes the default configuration file
  --help             Shows options
  --helphelp         Shows all options (including advanced)

INI file documentation of this tool:

Legend:

required parameter

advanced parameter

+IDSplitterSplits protein/peptide identifications off of annotated data files

version2.0.0 Version of the tool that generated this parameters file.

++1Instance '1' section for 'IDSplitter'

in Input file (data annotated with identifications)input file*.mzML,*.featureXML,*.consensusXML

out Output file (data without identifications). Either 'out' or 'id_out' are required. They can be used together.output file*.mzML,*.featureXML,*.consensusXML

id_out Output file (identifications). Either 'out' or 'id_out' are required. They can be used together.output file*.idXML

log Name of log file (created only when specified)

debug0 Sets the debug level

threads1 Sets the number of threads allowed to be used by the TOPP tool

no_progressfalse Disables progress logging to command linetrue,false

forcefalse Overwrite tool specific checks.true,false

testfalse Enables the test mode (needed for internal use only)true,false