| FeatureLinkerBase | Base class for different FeatureLinker tools |
| OpenSwathAssayGenerator | Generates filtered and optimized assays using TraML files |
| DatabaseFilter | The DatabaseFilter tool filters a protein database in fasta format according to one or multiple filtering criteria |
| FeatureLinkerUnlabeledKD | Group corresponding features across labelfree experiments |
| MetaboliteSpectralMatcher | MetaboliteSpectralMatcher assembles metabolite features from singleton mass traces |
| MRMTransitionGroupPicker | Picks peaks in MRM chromatograms |
| OpenSwathFileSplitter | A tool for splitting a single SWATH / DIA file into a set of files, each containing one SWATH window (plus one file for the MS1 survey scans) |
| PeakPickerIterative | A tool for peak detection in profile data. Executes the peak picking with high_res algorithm. |
| TICCalculator | Calculates the TIC of a raw mass spectrometric file |
| TopPerc | TopPerc facilitates the input to, the call of and output integration of Percolator. Percolator (http://per-colator.com/) is a tool to apply semi-supervised learning for peptide identification from shotgun proteomics datasets |
| Experimental List | |
| Improvements List | |
| Todo List | |
| Deprecated List | |
| Bug List |
| OpenMS / TOPP release 2.1.0 | Documentation generated on Sun Jun 11 2017 18:22:15 using doxygen 1.8.13 |